Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1165 91.5 1e-13 >seq1165 Length=25613772 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28547 TGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGA 28606 ||| || ||||| |||||||| ||||| | || || || || || ||| |||| ||| Sbjct 10935890 TGTGAAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGA 10935949 Query 28607 ACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 || || || | | | | ||||| || ||| ||||| |||||| | || Sbjct 10935950 GAGCTCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCC 10936009 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 || || ||| | || |||||||| || || ||| | ||||| ||| ||||||| Sbjct 10936010 GGACCAGCAGCGTCTCATCTTTGCTGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGA 10936069 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| ||||||||||||||||| ||| |||| Sbjct 10936070 TTACAACATTCAAAAAGAATCCACTTTGCA 10936099 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||||| || ||||| || ||||||||||||||| | ||| | || ||| Sbjct 9951373 GATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAAGATGGCAGAACGCTTGCAGAT 9951314 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||||||||| || || || || ||| |||| Sbjct 9951313 TATAACATTCAAAAGGAGTCGACGCTTCACTTGGT 9951279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| |||| || || || || || ||| ||| |||| Sbjct 10868231 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 10868290 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || ||||| || ||| ||||| ||||| | || ||||||| Sbjct 10868291 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAA 10868350 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || |||||||||||||| || |||| || ||||| Sbjct 10868351 CAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAAT 10868410 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| || ||||| ||| Sbjct 10868411 ATCCAGAAAGAGTCAACTCTTCAC 10868434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| |||| || || || || || ||| ||| |||| Sbjct 10928344 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 10928403 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || ||||| || ||| ||||| || || | || ||||||| Sbjct 10928404 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 10928463 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || |||||||||||||| || |||| || |||||| Sbjct 10928464 CAAAGATTGATCTTTGCCGGGAAACAATTGGAAGACGGCCGCACGTTGGCTGACTATAAC 10928523 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| || ||||| ||| Sbjct 10928524 ATCCAGAAAGAGTCAACTCTTCAC 10928547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425397551899842