Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq965 297 6e-76 >seq965 Length=51047765 Score = 297 bits (328), Expect = 6e-76 Identities = 386/529 (73%), Gaps = 6/529 (1%) Strand=Plus/Minus Query 18285 ATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCA 18344 |||||||| ||||| || || |||||||| | |||||| ||||||||||| || || Sbjct 18212009 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 18211950 Query 18345 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAA 18403 ||||||||||||||||| ||||| ||||| || | || || | | ||||| || || | Sbjct 18211949 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAA-AC--AGCA 18211893 Query 18404 G--GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTA 18461 | || ||||| || || | |||| |||||| |||||| || ||||||||||| | Sbjct 18211892 GTCGCTGCTGCAACAGGAGTTAAATATGCAACAGCAATCCAAGGACGCATACCTAGACGG 18211833 Query 18462 TAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACA 18521 ||||||||||||| | || ||||||||| || | || || | ||||| | ||| Sbjct 18211832 AAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTACGAAGTGTAGAACA 18211773 Query 18522 ATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 18581 || || | ||| || || || || |||||||| || || | || ||| |||||||| || Sbjct 18211772 ATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATC 18211713 Query 18582 GGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTG 18641 ||||| || || | ||| || || |||| | || | || || | || || || || Sbjct 18211712 GGGTAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATCGCGCTAGAAATAATATTA 18211653 Query 18642 TTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGA 18701 |||||||| |||| | ||| || |||| ||||||||||| || || || || |||||| Sbjct 18211652 TTTCCATAAAGTAGAGATCCAGAAGCAGGTTCACGAATACCGTCAATATCTACTGGAGGA 18211593 Query 18702 GCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGT 18761 ||||||| ||| || || | |||| | | || |||||| || | | ||||||||| | Sbjct 18211592 GCAGCAATAAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAA 18211533 Query 18762 ACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 || |||||||| || | ||| |||| ||| | || || || | ||||| Sbjct 18211532 ACACCAAACCAACCAATGTAAAGGCAGTTTTCAGTGCTAGTTATCCAGT 18211484 Score = 246 bits (272), Expect = 9e-61 Identities = 390/555 (70%), Gaps = 22/555 (4%) Strand=Plus/Minus Query 18285 ATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCA 18344 |||||||| ||||| || || |||||||| | |||||| ||||||||||| || || Sbjct 17867270 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 17867211 Query 18345 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAA 18403 ||||||||||||||||| ||||| ||||| || | || || | | ||||| || || | Sbjct 17867210 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAA-AC--AGCA 17867154 Query 18404 G--GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTA 18461 | || ||||| || | | ||| | |||||| |||||| || |||||||| || | Sbjct 17867153 GTCGCTGCTGCAACAGTAGTTGAACATGCAACAACAATCCAAGGACGCATACCCAGACGG 17867094 Query 18462 TAACTAAGTTCCCATTGTCGTCCCATGTAA---GCTG-CGATG------------CCGAT 18505 || |||||||||| | || ||||||||| ||| | ||| || | Sbjct 17867093 AAATTAAGTTCCCACTCACGACCCATGTAACAAGCTAACCATGTAACAAGCTACACCAAG 17867034 Query 18506 GAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGT 18565 | ||||| | ||||| || | ||| || | || || |||||||| || || | || Sbjct 17867033 TAAGAAGTGTAGAACAATTAGCTCATAAGGACTGCCATTGTATAACCATTCATCAACGGA 17866974 Query 18566 TGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGC 18625 ||| |||||||| || ||||| || || | ||| || || ||| | || | || || Sbjct 17866973 TGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGC 17866914 Query 18626 CCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATC 18685 || | || || || |||||||| |||| | ||| || ||||| ||| ||||||| || Sbjct 17866913 ACCAAAAATAATATTATTTCCATAAAGTAGAGATCCAGAAACAGGTTCATGAATACCGTC 17866854 Query 18686 TATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAG 18745 || || | ||||||||||||| || || || | |||| | || |||||| || | Sbjct 17866853 AATATCTATTGGAGGAGCAGCAATTAAGGCTATAATAAATACATAAGTTGCGGTCAATAA 17866794 Query 18746 TGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAAC 18805 | ||||||||| | || |||||||| || | ||| |||||||| | ||||| || | Sbjct 17866793 AGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTACTAGTTAT 17866734 Query 18806 CCAGTCACATAAACT 18820 ||||| ||| || || Sbjct 17866733 CCAGTTACAAAAGCT 17866719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151315887925412