Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq965 228 2e-55 >seq965 Length=51047765 Score = 228 bits (252), Expect = 2e-55 Identities = 360/513 (70%), Gaps = 2/513 (0%) Strand=Plus/Minus Query 21921 ATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCC 21980 ||||| || ||||||||||||||||| || | |||| ||||||| || || || || || Sbjct 18212009 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 18211950 Query 21981 AAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTC 22040 | |||||| ||||||||||| || || || | || || | | ||| ||||||||| Sbjct 18211949 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 18211890 Query 22041 GCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAG 22100 || || || ||||||| | || |||||| ||||| || | ||| ||||| || | Sbjct 18211889 GCTGCTGCAACAGGAGTTAAATATGCAACAGCAATCCAAGGACGCATACCTAGACGGAAA 18211830 Query 22101 CTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTG 22160 |||||||||||||| || ||||||||| | || ||||| | |||||| | || | Sbjct 18211829 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTACGAAGTGTAGAACAATT 18211770 Query 22161 AGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGG 22220 || | | |||||||| ||||| | ||||||||||| | || |||||||| || ||| Sbjct 18211769 AGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGG 18211710 Query 22221 TAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTA 22280 || || || | || || || || | |||| | || | || || || || || Sbjct 18211709 TAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATCGCGCTAGAAATAATATTATTT 18211650 Query 22281 CCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCG 22340 ||||| | || || |||| | ||||| || || || || || || || || || || Sbjct 18211649 CCATAAAGTAGAGATCCAGAAGCAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCA 18211590 Query 22341 CCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGAC 22399 ||| ||||||||||||||| || || |||| ||| | | | || ||||| | || Sbjct 18211589 GCAATAAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTA-GGGATCATCAAAAC 18211531 Query 22400 TCCGAACCATCCTACATAAAGACGGTTATTAGT 22432 || ||||| || | ||||| | ||| | ||| Sbjct 18211530 ACCAAACCAACCAATGTAAAGGCAGTTTTCAGT 18211498 Score = 176 bits (194), Expect = 1e-39 Identities = 372/553 (67%), Gaps = 24/553 (4%) Strand=Plus/Minus Query 21921 ATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCC 21980 ||||| || ||||||||||||||||| || | |||| ||||||| || || || || || Sbjct 17867270 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 17867211 Query 21981 AAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTC 22040 | |||||| ||||||||||| || || || | || || | | ||| ||||||||| Sbjct 17867210 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 17867151 Query 22041 GCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAG 22100 || || || |||| || || | ||||||| ||||| || | ||| || || || | Sbjct 17867150 GCTGCTGCAACAGTAGTTGAACATGCAACAACAATCCAAGGACGCATACCCAGACGGAAA 17867091 Query 22101 CTAAGTTCCCACTCTCGTCCCATGT---AAGCAAA-------------GACGCCAATGAG 22144 ||||||||||||| || ||||||| |||| || || |||| | Sbjct 17867090 TTAAGTTCCCACTCACGACCCATGTAACAAGCTAACCATGTAACAAGCTACACCAAGTAA 17867031 Query 22145 GAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGC 22204 |||||| | || | || | | |||| ||| ||||| | ||||||||||| | || Sbjct 17867030 GAAGTGTAGAACAATTAGCTCATAAGGACTGCCATTGTATAACCATTCATCAACGGATGC 17866971 Query 22205 AGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCC 22264 |||||||| || ||||| || || | || || || | | |||| | || || Sbjct 17866970 CGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGCACC 17866911 Query 22265 TGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGAT 22324 | || || || || ||||| | || || |||| || ||||| | || || || || Sbjct 17866910 AAAAATAATATTATTTCCATAAAGTAGAGATCCAGAAACAGGTTCATGAATACCGTCAAT 17866851 Query 22325 GTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGTTGTAGCGG-CAAGGA 22380 || | || || || ||| ||||| |||||||| | ||||| |||| ||| | Sbjct 17866850 ATCTATTGGAGGAGCAGCAATTAAGGCTATAATAAATACATAAGTT---GCGGTCAATAA 17866794 Query 22381 GGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAGAGGTGA 22440 | | || ||||| | || || ||||| || | ||||| ||||| | |||| || | Sbjct 17866793 AGTA-GGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTACTAGTTA 17866735 Query 22441 CCCAGGAACAAAA 22453 |||| |||||| Sbjct 17866734 TCCAGTTACAAAA 17866722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146205572764440