Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1030 105 8e-18 seq616 104 3e-17 seq1229 89.7 6e-13 seq1103 86.0 7e-12 >seq1030 Length=25649276 Score = 105 bits (116), Expect = 8e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||| | ||| | || ||||||||| ||||||||||||||| | ||| || | || | Sbjct 17554817 CGGGATTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAG 17554758 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || ||| | ||||| ||| |||| | || || || Sbjct 17554757 G-TCCAAGGGAAGGTTGTAGAAAGACCTCAGCATATGTTGATGAGGGTATCTATTGGAAT 17554699 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || |||||||||| | | |||||| | | |||||||||| | ||| Sbjct 17554698 TCACAAGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTT 17554639 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG--ATGTCCAGT 75364 || || ||| | || || || || |||||||| || ||||| || ||| |||| ||| Sbjct 17554638 CACCCATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCAGGCATGTTTAGT 17554579 Query 75365 T 75365 | Sbjct 17554578 T 17554578 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 64975 GAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAA 65034 |||||||| | | ||| | |||||| | || || || || | | ||||| || | Sbjct 1351863 GAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACG 1351922 Query 65035 TGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAGCGCCTTTTTGCGT 65092 ||||| | || ||| | ||| | |||| | ||||| ||| | | | |||| Sbjct 1351923 TGGGCGTTAAATTGGATCGAC-----GGCTCGGAGACTTTCGCGGAGAGATTAATCGCGT 1351977 Query 65093 TTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGA 65152 |||| || |||||||| || |||||||| ||| || ||||| || | |||| | || | Sbjct 1351978 TTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCAAAA 1352037 Query 65153 AGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTC 65212 |||| || | ||||| || || |||||||| || | || || ||||||||||||| Sbjct 1352038 AGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTGATCTCGCGAGATGAGGGTC 1352097 Query 65213 TCCAC 65217 ||||| Sbjct 1352098 TCCAC 1352102 >seq616 Length=36375926 Score = 104 bits (114), Expect = 3e-17 Identities = 290/443 (65%), Gaps = 4/443 (1%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| || || ||| | || ||||||| | || | ||| || || || || Sbjct 11420959 GTGGAGTTCCTTAAGAAGCCTGAGAGATTTACTGCTATTGGAGCTCGTATTCCAAAGGGT 11420900 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||||| ||| ||||| || || ||||| || || ||| || || || ||| Sbjct 11420899 GTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAGGCAATTGCTGGT 11420840 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| ||||| || || | | | ||||| ||||||||||||||| Sbjct 11420839 GAAGCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 11420780 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || ||||| || || || ||||| || | | ||| || ||| || || ||| Sbjct 11420779 GTTGGTGCATCTAGAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATT 11420720 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAG 175534 || || | ||||| |||||||| || || | ||| | | |||| | | | | || Sbjct 11420719 GTATTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGG--AG 11420662 Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594 ||||| || ||||| || || |||| || || | || || |||||||| ||||| Sbjct 11420661 GGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGG 11420602 Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCC 175654 | | ||||| || | || ||||| || ||||| | | ||| || |||||| ||| Sbjct 11420601 GTAATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTTGATTCTGCCT 11420542 Query 175655 TCCTTCGCCCGGGTCGTTTTGAT 175677 | | | || || ||||||||| Sbjct 11420541 TATTGAGGCCTGGACGTTTTGAT 11420519 >seq1229 Length=21133251 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||| | ||| | || ||| ||||| |||||||||| |||| | ||| |||| || Sbjct 17548786 CGGGATTTTGACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAG 17548727 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | | |||| || || | ||||| ||| |||| || | || | Sbjct 17548726 G--TCCAAGGAAAAGTTGTAGAAAGACCCCAACATATGTTGATGAGGGTTGCTGTTGGGA 17548669 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | ||| ||| ||||||||||||| | | |||||| | | |||||| ||| | || Sbjct 17548668 TTCACAAGGATGACATTGATTCTGCTATCAAAACATACCATATGATGTCTCAACGATGGT 17548609 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | | || ||| | || || || || |||||||| ||||||||| | ||| Sbjct 17548608 TTACCCATGCATCTCCCACACTTTTTAATGCTGGAACACCAAGAGCCCAG 17548559 >seq1103 Length=43299053 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 175385 CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCT 175444 ||||| || | ||||| ||| ||||||||||||| || || || || | ||| | | Sbjct 42541407 CTGCCTCAGAGTTTGTTGAGTTGTTTGTTGGTGTTGGCGCATCCAGAGTGAGGGATTTGT 42541466 Query 175445 TTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG 175504 |||| | ||| || ||| |||||||| || |||||||| |||||||| |||| Sbjct 42541467 TTGAGAAGGCCAAATCGAAGGCACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGG 42541526 Query 175505 GCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAA 175562 | | || | | || || | | | | || ||| || || ||||| || || ||||| Sbjct 42541527 GGAGACAGAGAGGAGCAGGGCTTGGAGG--AGGAAACGATGAAAGAGAGCAGACTATTAA 42541584 Query 175563 TCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || | || || |||||||||||| Sbjct 42541585 TCAGCTTTTGACTGAAATGGATGGCTTT 42541612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596559174946240