Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq965 251 9e-62 >seq965 Length=51047765 Score = 251 bits (278), Expect = 9e-62 Identities = 370/524 (71%), Gaps = 0/524 (0%) Strand=Plus/Minus Query 8341 ATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCT 8400 ||||| ||||| ||||| || |||||||| | ||||||||| || |||||||| || ||| Sbjct 18212009 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 18211950 Query 8401 AGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAA 8460 |||||||| |||||||| || || ||||| | ||| || | ||||| || || Sbjct 18211949 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 18211890 Query 8461 GCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTAT 8520 || || | || |||| |||||| ||| ||||| || | |||||||| ||| | Sbjct 18211889 GCTGCTGCAACAGGAGTTAAATATGCAACAGCAATCCAAGGACGCATACCTAGACGGAAA 18211830 Query 8521 GATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACC 8580 | ||||||| | |||||||||| || | ||||| | |||||| | | || Sbjct 18211829 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTACGAAGTGTAGAACAATT 18211770 Query 8581 AACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGA 8640 | || ||| ||||| || || || ||||| ||||| | | || |||||||| || || Sbjct 18211769 AGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGG 18211710 Query 8641 TAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTT 8700 || || || || || ||||| | |||| |||| | || | ||| || || || ||| Sbjct 18211709 TAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATCGCGCTAGAAATAATATTATTT 18211650 Query 8701 CCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCA 8760 ||||| | | || || | | ||||||||||||||||||| ||||| || || |||||| Sbjct 18211649 CCATAAAGTAGAGATCCAGAAGCAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCA 18211590 Query 8761 GCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACT 8820 |||||||| || | ||||| || || || | || || ||| ||||| | ||| Sbjct 18211589 GCAATAAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACA 18211530 Query 8821 CCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||||||||| | ||||| | ||| | || || || | ||| Sbjct 18211529 CCAAACCAACCAATGTAAAGGCAGTTTTCAGTGCTAGTTATCCA 18211486 Score = 194 bits (214), Expect = 2e-44 Identities = 371/549 (68%), Gaps = 16/549 (3%) Strand=Plus/Minus Query 8341 ATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCT 8400 ||||| ||||| ||||| || |||||||| | ||||||||| || |||||||| || ||| Sbjct 17867270 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 17867211 Query 8401 AGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAA 8460 |||||||| |||||||| || || ||||| | ||| || | ||||| || || Sbjct 17867210 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 17867151 Query 8461 GCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTAT 8520 || || | || | || | |||| ||| ||||| || | |||||| | ||| | Sbjct 17867150 GCTGCTGCAACAGTAGTTGAACATGCAACAACAATCCAAGGACGCATACCCAGACGGAAA 17867091 Query 8521 GATAACTCCCACTGTCTACCCATGTAAGCAG-------------AAATTCCAATAAG--- 8564 | ||||||| | |||||||||| || || | || ||| Sbjct 17867090 TTAAGTTCCCACTCACGACCCATGTAACAAGCTAACCATGTAACAAGCTACACCAAGTAA 17867031 Query 8565 GAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGC 8624 |||||| | | || | || ||| |||| || || || ||||| ||||| | | || Sbjct 17867030 GAAGTGTAGAACAATTAGCTCATAAGGACTGCCATTGTATAACCATTCATCAACGGATGC 17866971 Query 8625 AGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACC 8684 |||||||| || || || || || || || ||||| |||| |||| | ||||| Sbjct 17866970 CGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGCACC 17866911 Query 8685 AGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGAT 8744 | | || || || |||||||| | | || || | |||||||||| |||||||||| || Sbjct 17866910 AAAAATAATATTATTTCCATAAAGTAGAGATCCAGAAACAGGTTCATGAATACCGTCAAT 17866851 Query 8745 ATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCA 8804 ||| | || ||||||||||| || || | ||||| | || || | || || Sbjct 17866850 ATCTATTGGAGGAGCAGCAATTAAGGCTATAATAAATACATAAGTTGCGGTCAATAAAGT 17866791 Query 8805 AGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||| ||||| | ||| ||||||||||| | ||||| | ||| | ||||| || | ||| Sbjct 17866790 AGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTACTAGTTATCCA 17866731 Query 8865 CTCGCAAAA 8873 | ||||| Sbjct 17866730 GTTACAAAA 17866722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615851637804560