Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq965 228 2e-55 >seq965 Length=51047765 Score = 228 bits (252), Expect = 2e-55 Identities = 360/513 (70%), Gaps = 2/513 (0%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | ||| | ||||| | || ||||| || || | ||||| || | | | ||| | Sbjct 18211498 ACTGAAAACTGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCC-TACTTTATTGAC 18211556 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 ||| || || ||||||||||||||| ||| || || || || || || || || || Sbjct 18211557 CGCAACTTCTGTATTTATTATCGCCTTTATTGCTGCTCCTCCAGTAGATATTGACGGTAT 18211616 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 || ||||| | |||| || || | ||||| || || || || || | || | | Sbjct 18211617 TCGTGAACCTGCTTCTGGATCTCTACTTTATGGAAATAATATTATTTCTAGCGCGATTAT 18211676 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | || || || || | || || ||||| || |||||||| || | |||| Sbjct 18211677 TCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGA 18211736 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||||||| | ||||| |||||||| | | || | || | |||||| | ||||| || Sbjct 18211737 TGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCGTAATTGGTGT 18211796 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | ||||||||| || |||||||||||||| | || ||||| ||| | || ||||| Sbjct 18211797 AGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGTCCTTGGAT 18211856 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673 |||||| || | ||||||| || || ||||||||||| ||| | | || || | Sbjct 18211857 TGCTGTTGCATATTTAACTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAAT 18211916 Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733 || || || ||||||||||| |||||| | || || || || || ||||||| ||| Sbjct 18211917 CGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCAT 18211976 Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTAT 41766 | | || ||||||||||||||||| || ||||| Sbjct 18211977 GATTGTATTCCAGGCTGAGCACAACATCCTTAT 18212009 Score = 176 bits (194), Expect = 1e-39 Identities = 372/553 (67%), Gaps = 24/553 (4%) Strand=Plus/Plus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 |||||| |||| | || |||| | ||||| ||||| | || ||||| || || | Sbjct 17866722 TTTTGTAACTGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 17866781 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGT---TTTATTATCGCCTTTGTTGGCGC 41349 ||||| || | | | ||| |||| ||||| | |||||||| ||||| ||| || Sbjct 17866782 ATGATCCC-TACTTTATTGACCGC---AACTTATGTATTTATTATAGCCTTAATTGCTGC 17866837 Query 41350 ACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAA 41409 || || | || || || || || | ||||| || |||| || || | ||||| || Sbjct 17866838 TCCTCCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAAA 17866897 Query 41410 CAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCC 41469 || || || | || || | |||| | | || || || | || || ||||| Sbjct 17866898 TAATATTATTTTTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCC 17866957 Query 41470 AATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCAC 41529 || |||||||| || | ||||||||||| | ||||| ||| |||| | | || | Sbjct 17866958 GATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTAAT 17867017 Query 41530 CGTATTCCACTTCCTCATTGGCGTC-------------TTTGCTT---ACATGGGACGAG 41573 || | |||||| | |||| || || |||| ||||||| || | Sbjct 17867018 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCGTG 17867077 Query 41574 AGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTC 41633 |||||||||||| | || || || ||| | || ||||| ||||||| | || || Sbjct 17867078 AGTGGGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCAACTA 17867137 Query 41634 CTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTG 41693 |||| || || ||||||||||| ||| | | || || | || || || |||||||| Sbjct 17867138 CTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTG 17867197 Query 41694 ATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGC 41753 ||| |||||| | || || || || || ||||||| |||| | || ||||||||||||| Sbjct 17867198 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 17867257 Query 41754 ACAATATTCTTAT 41766 |||| || ||||| Sbjct 17867258 ACAACATCCTTAT 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146211972658192