Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq965 293 7e-75 >seq965 Length=51047765 Score = 293 bits (324), Expect = 7e-75 Identities = 384/529 (73%), Gaps = 2/529 (0%) Strand=Plus/Plus Query 42294 TAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGAT 42353 ||||||| | ||| ||| | ||| | ||||| |||| ||||||||||| ||||||| Sbjct 18211482 TAACTGGATAACTAGCACTGAAAACTGCCTTTACATTGGTTGGTTTGGTGTTTTGATGAT 18211541 Query 42354 TCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGG 42412 || | | | | || || | ||| |||||| |||| || |||||||| ||||| | Sbjct 18211542 CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTTATTGCTGCTCCTCCAG 18211600 Query 42413 TAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCA 42472 |||| ||||| || ||||||||||||| ||||| ||||| || ||||| || || || | Sbjct 18211601 TAGATATTGACGGTATTCGTGAACCTGCTTCTGGATCTCTACTTTATGGAAATAATATTA 18211660 Query 42473 TCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGG 42532 | ||| | || | | |||| || || || || | ||||| || |||| |||| Sbjct 18211661 TTTCTAGCGCGATTATTCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCGATATGGG 18211720 Query 42533 AAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCC 42592 |||| || |||| |||||| | ||||||||||| |||||| |||| | || | | Sbjct 18211721 AAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTAC 18211780 Query 42593 ACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTG 42652 ||||| | || ||| | | |||| |||| || || ||||||||| | ||| || | Sbjct 18211781 ACTTCGTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAG 18211840 Query 42653 GGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCT 42712 | ||| | || ||||| |||||| || | | ||||| || ||||||||||| || | Sbjct 18211841 GTATGCGTCCTTGGATTGCTGTTGCATATTTAACTCCTGTTGCAGCAGCGACTGCTGTTT 18211900 Query 42713 TCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCG 42772 || | |||| ||| | || ||||| |||||| ||||| |||||||| || || || | Sbjct 18211901 TCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTG 18211960 Query 42773 GTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTAT 42821 |||| |||||||||||| | || ||||||||||| || ||||| ||||| Sbjct 18211961 GTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 18212009 Score = 260 bits (288), Expect = 4e-65 Identities = 388/550 (71%), Gaps = 18/550 (3%) Strand=Plus/Plus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348 |||||||||||| | ||| ||| | ||||| ||||| |||| ||||||||||| || Sbjct 17866722 TTTTGTAACTGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 17866781 Query 42349 ATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCC 42407 ||||| || | | | | || | | ||| |||||| | || || |||||||| || Sbjct 17866782 ATGATCCCTACTTTATTGACCGC-AACTTATGTATTTATTATAGCCTTAATTGCTGCTCC 17866840 Query 42408 TCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAA 42467 ||| |||| ||||| || |||| ||||||||| ||||| ||||| || ||||| || || Sbjct 17866841 TCCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAAATAA 17866900 Query 42468 CATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGAT 42527 || || | |||||| | | |||| | || || || | ||||| || |||| Sbjct 17866901 TATTATTTTTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 17866960 Query 42528 CTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGT 42587 |||||||| || |||| |||||| | ||||||||| | |||||| |||| | || Sbjct 17866961 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTAATTGT 17867020 Query 42588 GTTCCACTTCCTTATCG--GTATCTT--------------CTCTTACTTGGGACGCGAAT 42631 | |||||| | | | ||| ||| | |||| |||| || || | Sbjct 17867021 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCGTGAGT 17867080 Query 42632 GGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTG 42691 |||||||| | ||| || || ||| | || ||||| ||||||| | || | ||| Sbjct 17867081 GGGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCAACTACTG 17867140 Query 42692 TGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATG 42751 | || ||||||||||| || ||| | |||| ||| | || ||||| |||||| |||| Sbjct 17867141 TTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATG 17867200 Query 42752 GAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATA 42811 | |||||||| || || || ||||| |||||||||||| | || ||||||||||| || | Sbjct 17867201 GTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACA 17867260 Query 42812 ACATTCTTAT 42821 |||| ||||| Sbjct 17867261 ACATCCTTAT 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143530417176104