Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq965 221 4e-53 >seq965 Length=51047765 Score = 221 bits (244), Expect = 4e-53 Identities = 370/527 (70%), Gaps = 6/527 (1%) Strand=Plus/Minus Query 26327 ATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCA 26386 || || || || || || || |||||||| | ||| ||||| |||||||||||||| || Sbjct 18212009 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 18211950 Query 26387 AGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGA 26446 |||||||| |||||| |||||| ||||| |||| || || | ||||| || || Sbjct 18211949 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 18211890 Query 26447 GCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAA 26506 ||||| | | || | | |||||||||| ||||| || | ||| ||||| | | || Sbjct 18211889 GCTGCTGCAACAGGAGTTAAATATGCAACAGCAATCCAAGGACGCATACCTAGACGGAAA 18211830 Query 26507 GATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATG 26566 |||||||||| | || || ||||| || |||| |||||| | | ||| Sbjct 18211829 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTACGAAGTGTAGAACAATT 18211770 Query 26567 AGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-TGCCAGCTTCCCAGATCGG 26625 || | ||| || ||||||||||||| ||| || || | | |||| |||||||| ||||| Sbjct 18211769 AGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCC-GCTTCCCATATCGG 18211711 Query 26626 GTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTT 26685 ||||||||| | || || || |||| | || | | || | || || ||||| || Sbjct 18211710 GTAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATCGCGCTAGAAATAATATTATT 18211651 Query 26686 TCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGC 26745 ||| || | || || || ||| | || ||||| || || || |||||||| || || || Sbjct 18211650 TCCATAAAGTAGAGATCCAGAAGCAGGTTCACGAATACCGTCAATATCTACTGGAGGAGC 18211591 Query 26746 TGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTG-CGAGTAAGCAGGGTATCATAAGC 26803 || || ||||| | ||||| ||| | ||| || | | | ||| |||| ||||| | Sbjct 18211590 AGCAATAAAGGCGATAATAAATACA-GAAGTTGCGGTCAATAAAGTAGGG-ATCATCAAA 18211533 Query 26804 ACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCA 26850 || || ||||| || | || || | ||| ||||| || || | ||| Sbjct 18211532 ACACCAAACCAACCAATGTAAAGGCAGTTTTCAGTGCTAGTTATCCA 18211486 Score = 203 bits (224), Expect = 1e-47 Identities = 385/557 (69%), Gaps = 26/557 (5%) Strand=Plus/Minus Query 26327 ATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCA 26386 || || || || || || || |||||||| | ||| ||||| |||||||||||||| || Sbjct 17867270 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 17867211 Query 26387 AGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGA 26446 |||||||| |||||| |||||| ||||| |||| || || | ||||| || || Sbjct 17867210 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 17867151 Query 26447 GCTGCGG--ATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGT 26504 ||||| | | ||| || || | ||||||||| ||||| || | ||| || || | | Sbjct 17867150 GCTGCTGCAACAGTAGT--TGAACATGCAACAACAATCCAAGGACGCATACCCAGACGGA 17867093 Query 26505 AAGATAGTTCCCACTGTCTCCC--TGCAT-ATGCT-------------GCTACTCCTATT 26548 || |||||||||| | || || | | ||| ||||| || | | Sbjct 17867092 AATTAAGTTCCCACTCACGACCCATGTAACAAGCTAACCATGTAACAAGCTACACCAAGT 17867033 Query 26549 AAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-T 26607 |||||||| | | ||| || | ||| || | ||||||||||| ||| || || | | | Sbjct 17867032 AAGAAGTGTAGAACAATTAGCTCATAAGGACTGCCATTGTATAACCATTCATCAACGGAT 17866973 Query 26608 GCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGC 26667 ||| |||||||| |||||||||||||| | || || || ||| | || | | || Sbjct 17866972 GCC-GCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGC 17866914 Query 26668 TCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATC 26727 || | || ||||| ||||| || | || || || ||||| || ||| | || || || Sbjct 17866913 ACCAAAAATAATATTATTTCCATAAAGTAGAGATCCAGAAACAGGTTCATGAATACCGTC 17866854 Query 26728 TATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTG-CGAGT 26785 ||||||| || || || || || ||||| | ||||| |||| ||| || | | | Sbjct 17866853 AATATCTATTGGAGGAGCAGCAATTAAGGCTATAATAAATACAT-AAGTTGCGGTCAATA 17866795 Query 26786 AAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTA 26845 ||| |||| ||||| | || || ||||| || | || || ||||| |||||||| || Sbjct 17866794 AAGTAGGG-ATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTACTAGTT 17866736 Query 26846 ACCCACTCACAAAACCT 26862 | ||| | |||||| || Sbjct 17866735 ATCCAGTTACAAAAGCT 17866719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147709547796160