Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq965 273 3e-68 >seq965 Length=51047765 Score = 273 bits (302), Expect = 3e-68 Identities = 375/524 (72%), Gaps = 0/524 (0%) Strand=Plus/Plus Query 154978 TGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCT 155037 ||| ||||| |||| ||| || | || | |||||||| |||||| | ||||||||| Sbjct 18211486 TGGATAACTAGCACTGAAAACTGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 18211545 Query 155038 TGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGAC 155097 | | | || || | || ||| ||||||| |||||||| ||||| ||||| Sbjct 18211546 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTTATTGCTGCTCCTCCAGTAGAT 18211605 Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157 ||||| |||||||||||||| | |||| ||| || | ||||| || || || || ||| Sbjct 18211606 ATTGACGGTATTCGTGAACCTGCTTCTGGATCTCTACTTTATGGAAATAATATTATTTCT 18211665 Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217 | || || | |||| ||| | || || ||| | || || || || || |||||||| Sbjct 18211666 AGCGCGATTATTCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCG 18211725 Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 ||| | ||||||| ||||| |||||||| ||||||| | || | || | |||||| Sbjct 18211726 GCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 18211785 Query 155278 CTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATG 155337 | || || | | ||| |||||| ||||||||||| || |||||| || ||| Sbjct 18211786 GTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATG 18211845 Query 155338 CGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTT 155397 ||||||||||| ||||||||| | | || || | || ||| ||||| ||| | Sbjct 18211846 CGTCCTTGGATTGCTGTTGCATATTTAACTCCTGTTGCAGCAGCGACTGCTGTTTTCTTG 18211905 Query 155398 GTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACT 155457 | || || |||||||||| ||| ||||||| |||||||| || |||||||||||| Sbjct 18211906 ATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 18211965 Query 155458 TTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTAT 155501 || |||| ||| | || ||||| || || ||||| |||||||| Sbjct 18211966 TTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 18212009 Score = 235 bits (260), Expect = 6e-57 Identities = 377/541 (70%), Gaps = 18/541 (3%) Strand=Plus/Plus Query 154978 TGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCT 155037 ||| ||||| | |||| |||||| | || | |||||||| |||||| | ||||||||| Sbjct 17866731 TGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 17866790 Query 155038 TGCCTCCTCGCTGCTGCTACATGC-TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGA 155096 | | | || || ||| || ||| | ||||| |||||||| ||||| |||| Sbjct 17866791 ACTTTATTGACCGCAACTT-ATGTATTTATTATAGCCTTAATTGCTGCTCCTCCAATAGA 17866849 Query 155097 CATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTC 155156 ||||| ||||||| |||||| || |||| ||| || | ||||| || || || || | Sbjct 17866850 TATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAAATAATATTATTTT 17866909 Query 155157 TGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGC 155216 |||||| || | |||| ||| || || ||| | || || || || || |||||||| Sbjct 17866910 TGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC 17866969 Query 155217 AGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTT 155276 ||| | ||||||| ||||| |||||||| |||||| | || | || | ||||| Sbjct 17866970 GGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTAATTGTTCTACACTT 17867029 Query 155277 CCTTATCGGAATCACAGCATAC----------TGT------GGTCGTCAGTGGGAACTTT 155320 | | | || | | ||| ||| |||||| ||||||||||| Sbjct 17867030 CTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA 17867089 Query 155321 CTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTG 155380 || |||||| || |||||||||||||| |||||||| || | | || | || | Sbjct 17867090 ATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCAACTACTGTTGCAGCAG 17867149 Query 155381 CGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTC 155440 || ||||| ||| | | || || |||||||||| ||| ||||||| ||||||| Sbjct 17867150 CGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTC 17867209 Query 155441 TTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTA 155500 | || |||||||||||||| |||| ||| | || ||||| || || ||||| ||||||| Sbjct 17867210 TAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTA 17867269 Query 155501 T 155501 | Sbjct 17867270 T 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584824980004880