Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq965 288 3e-73 >seq965 Length=51047765 Score = 288 bits (318), Expect = 3e-73 Identities = 385/530 (73%), Gaps = 4/530 (1%) Strand=Plus/Minus Query 40983 ATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCT 41042 || || |||||||| || || ||||| |||| |||||||||||| || ||| ||||||| Sbjct 18212009 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 18211950 Query 41043 AAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGA 41102 | ||||||||||||||| ||| || ||||||| ||| || | ||||| ||||| Sbjct 18211949 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 18211890 Query 41103 GCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTAT 41162 ||||||| | |||| | ||||| ||| ||||| || | ||||||||| | | | Sbjct 18211889 GCTGCTGCAACAGGAGTTAAATATGCAACAGCAATCCAAGGACGCATACCTAGACGGAAA 18211830 Query 41163 GAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATG 41222 ||||||||||| | ||| ||| ||||| || |||| ||||| | ||||| Sbjct 18211829 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTACGAAGTGTAGAACAATT 18211770 Query 41223 AGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGG 41281 || | ||| || ||||| ||||||| ||| || || | | ||||| ||||||| || || Sbjct 18211769 AGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCG-CTTCCCATATCGG 18211711 Query 41282 GTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTT 41341 ||| ||||| | || || || |||| | |||| | || | ||| |||||||| || Sbjct 18211710 GTAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATCGCGCTAGAAATAATATTATT 18211651 Query 41342 CCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGC 41401 || || | || || || ||| | || ||||| || || || |||||||| || || || Sbjct 18211650 TCCATAAAGTAGAGATCCAGAAGCAGGTTCACGAATACCGTCAATATCTACTGGAGGAGC 18211591 Query 41402 TGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCA 41460 || ||||||||||| || || ||| | || || || | ||| | || ||||| | | Sbjct 18211590 AGCAATAAAGGCGATAATAAATACA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAA 18211532 Query 41461 CACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTA 41510 ||||||||||||| | ||| |||| ||| || |||||||| | ||||||| Sbjct 18211531 CACCAAACCAACCAATGTAAAGGCAGTTTTCAGTGCTAGTTATCCAGTTA 18211482 Score = 246 bits (272), Expect = 9e-61 Identities = 387/551 (70%), Gaps = 20/551 (4%) Strand=Plus/Minus Query 40983 ATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCT 41042 || || |||||||| || || ||||| |||| |||||||||||| || ||| ||||||| Sbjct 17867270 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 17867211 Query 41043 AAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGA 41102 | ||||||||||||||| ||| || ||||||| ||| || | ||||| ||||| Sbjct 17867210 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 17867151 Query 41103 GCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTAT 41162 ||||||| | | || || |||| |||| ||||| || | |||||| || | | | Sbjct 17867150 GCTGCTGCAACAGTAGTTGAACATGCAACAACAATCCAAGGACGCATACCCAGACGGAAA 17867091 Query 41163 GAAAGTTCCCACTGTCTACCAGCGTAT---GCT-------------GCTACTCCTATTAA 41206 ||||||||||| | ||| ||| ||| ||||| || | ||| Sbjct 17867090 TTAAGTTCCCACTCACGACCCATGTAACAAGCTAACCATGTAACAAGCTACACCAAGTAA 17867031 Query 41207 AAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGC 41265 ||||| | ||||| || | ||| || | ||| ||||||| ||| || || | | ||| Sbjct 17867030 GAAGTGTAGAACAATTAGCTCATAAGGACTGCCATTGTATAACCATTCATCAACGGATGC 17866971 Query 41266 CGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTC 41325 || ||||||| || ||||| ||||| | || || || ||| | |||| | || | Sbjct 17866970 CG-CTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGCAC 17866912 Query 41326 CAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTA 41385 || | |||||||| || || || | || || || ||||| || ||| | || || || | Sbjct 17866911 CAAAAATAATATTATTTCCATAAAGTAGAGATCCAGAAACAGGTTCATGAATACCGTCAA 17866852 Query 41386 TATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAAT 41444 |||||| || || || || || ||||| || || || |||| | | || || | ||| Sbjct 17866851 TATCTATTGGAGGAGCAGCAATTAAGGCTATAATAAATACATAAGTT-GCGGTCAATAAA 17866793 Query 41445 GCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACC 41504 | || ||||| | |||||||||||||| | ||| |||||||| || || ||||| | | Sbjct 17866792 GTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTACTAGTTATC 17866733 Query 41505 CAGTTACAAAA 41515 ||||||||||| Sbjct 17866732 CAGTTACAAAA 17866722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143700014360532