Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq965 268 1e-66 >seq965 Length=51047765 Score = 268 bits (296), Expect = 1e-66 Identities = 355/493 (72%), Gaps = 0/493 (0%) Strand=Plus/Minus Query 67812 ATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCA 67871 ||||||||||||||||| || ||||| || | |||| |||| ||||||||||| || || Sbjct 18212009 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 18211950 Query 67872 AGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAAT 67931 |||||||| | ||||| ||| |||||||||| || |||| |||||| ||||| Sbjct 18211949 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 18211890 Query 67932 GCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAA 67991 ||||| | || |||| | ||||| ||| ||||||||||||||||| |||||| || Sbjct 18211889 GCTGCTGCAACAGGAGTTAAATATGCAACAGCAATCCAAGGACGCATACCTAGACGGAAA 18211830 Query 67992 GAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACA 68051 ||||||||||| |||||| ||| | | || || | |||||| | || | Sbjct 18211829 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTACGAAGTGTAGAACAATT 18211770 Query 68052 AGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGA 68111 || | |||| || ||||| || ||||| ||||| | | ||| |||||||| || || Sbjct 18211769 AGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGG 18211710 Query 68112 TAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTA 68171 || || || | ||| || || | ||| |||||| || || | |||||| || || || Sbjct 18211709 TAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATCGCGCTAGAAATAATATTATTT 18211650 Query 68172 CCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCT 68231 || || | || || || | | ||||||| | ||||| || ||||| |||||||| || Sbjct 18211649 CCATAAAGTAGAGATCCAGAAGCAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCA 18211590 Query 68232 GCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACA 68291 ||||| || || || || || || | ||| | | || ||| |||||||| ||| Sbjct 18211589 GCAATAAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACA 18211530 Query 68292 CCGAACCAACCAA 68304 || |||||||||| Sbjct 18211529 CCAAACCAACCAA 18211517 Score = 228 bits (252), Expect = 9e-55 Identities = 383/551 (70%), Gaps = 26/551 (5%) Strand=Plus/Minus Query 67812 ATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCA 67871 ||||||||||||||||| || ||||| || | |||| |||| ||||||||||| || || Sbjct 17867270 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 17867211 Query 67872 AGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAAT 67931 |||||||| | ||||| ||| |||||||||| || |||| |||||| ||||| Sbjct 17867210 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 17867151 Query 67932 GCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAA 67991 ||||| | || | || || |||| ||| ||||||||||||||||| |||||| || Sbjct 17867150 GCTGCTGCAACAGTAGTTGAACATGCAACAACAATCCAAGGACGCATACCCAGACGGAAA 17867091 Query 67992 GAAAGTTCCCACTGACGACC------ACA----------GTATGCTGTGATTCCGATAAG 68035 ||||||||||| |||||| ||| ||| | | || | | Sbjct 17867090 TTAAGTTCCCACTCACGACCCATGTAACAAGCTAACCATGTAACAAGCTACACCAAGTAA 17867031 Query 68036 GAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGC 68095 |||||| | || | || | |||| | ||||| || ||||| ||||| | | ||| Sbjct 17867030 GAAGTGTAGAACAATTAGCTCATAAGGACTGCCATTGTATAACCATTCATCAACGGATGC 17866971 Query 68096 TGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACC 68155 |||||||| || || || || || | ||| || || ||| |||||| || ||||| Sbjct 17866970 CGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGCACC 17866911 Query 68156 AGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGAT 68215 | |||| || || || || || | || || || | ||||||||| ||||| || || Sbjct 17866910 AAAAATAATATTATTTCCATAAAGTAGAGATCCAGAAACAGGTTCATGAATACCGTCAAT 17866851 Query 68216 ATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA---GCAAGTTGCTGCTGCGAGCAA 68272 ||| | |||||| || ||||| || || || || || ||||||| | | | || Sbjct 17866850 ATCTATTGGAGGAGCAGCAATTAAGGCTATAATAAATACATAAGTTGCGG--TCAATAAA 17866793 Query 68273 GCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCA--ACTGAGGTG 68330 | ||| |||||||| ||||| |||||||||| || | ||| || ||| ||| || Sbjct 17866792 G-TAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTACT--AGTT 17866736 Query 68331 ACCCAGTTACA 68341 | ||||||||| Sbjct 17866735 ATCCAGTTACA 17866725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566937292597680