Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq616 132 1e-25 seq1165 127 6e-24 seq1229 120 9e-22 seq1103 120 9e-22 seq1030 98.7 3e-15 seq1282 87.8 5e-12 >seq616 Length=36375926 Score = 132 bits (146), Expect = 1e-25 Identities = 286/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| ||| |||| || ||||| || || || ||||||||||| Sbjct 11420603 CTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCC 11420662 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 |||| ||| | | | ||| || | || ||||| ||||||||||| || | || Sbjct 11420663 TCCTCC--AATTCC---AGTTCCTCTTTGTCTT-CCAACGGCATCAATTTCATCCACAAA 11420716 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCT 289113 | | || |||| ||| | | | || | || ||| | |||| || | ||||| Sbjct 11420717 TACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA--TCTCGGACTCTAGATGCA 11420774 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 |||| ||||||| |||| || ||||| |||||| | |||| | || | |||| ||| Sbjct 11420775 CCAACACCAACAAACATCTCAACAAACTCAGAACCTGATA-TGGAGAAAAATGGAACACC 11420833 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || || | |||| | || ||||| ||||| || ||||| || || || | | Sbjct 11420834 GGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAG 11420893 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| |||||||| | || ||| || || || ||||||| |||| | || Sbjct 11420894 AAGAACACCCTTTGGAATACGAGCTCCAATAGCAGTAAATCTCTCAGGCTTCTTAAGGAA 11420953 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || | |||| | || | ||||||||||||| ||| || |||||| |||| || Sbjct 11420954 CTCCACCACTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATCATCAAATGT 11421013 >seq1165 Length=25613772 Score = 127 bits (140), Expect = 6e-24 Identities = 224/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC- 289088 || || ||||| ||||| ||||| || | || || || ||||| | || | ||| Sbjct 24961107 CCCACTGCATCTATTTCATCAATAAACACCAAGCATGGCGAATTC-GCCTTGGCCTTGTT 24961165 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || |||||||| | || ||||| | ||||||| |||| || | ||||| || | Sbjct 24961166 AAACAAATCTCTTACTCTTGAAGCTCCTACACCAACAAACATCTCAATGAATTCCGATCC 24961225 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | || || | || |||||| || |||| ||| | |||| || ||||| Sbjct 24961226 TGACAGAGAAAAAAAGGGAACCCCTGCTTCTCCAGCTATGGCCTTAGCCAACAGCGTCTT 24961285 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||| || ||||| || ||||||||||||| ||||| | |||||| ||| | | Sbjct 24961286 TCCTGTCCCTGGTGGCCCAACTAATAGAACTCCTTTTGGAATTTTTGCACCAACTGCGGC 24961345 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 ||||||| || ||| | |||| ||||| || | || || | |||||| ||||| Sbjct 24961346 GAATTTCTCTGGTGTCTGAAGGAATTGCACAATCTCTTGAAAATCTTGTTTTGCTTCATC 24961405 Query 289329 ACATCCTGCTACATCAGCAAAAGT 289352 | ||| || |||||| |||| || Sbjct 24961406 AACTCCAGCAACATCATCAAATGT 24961429 >seq1229 Length=21133251 Score = 120 bits (132), Expect = 9e-22 Identities = 216/313 (69%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || |||||||| ||| | || || | ||| || || || || ||| || || Sbjct 520856 CATTATATCTTCCATTGCCTTCACTAGCCGCCTCTGGATGTATCCGGTCTCAGAAGTCTT 520915 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| ||||| | | |||||||||||||||||| || | ||| | || Sbjct 520916 CACTGCAGTATCAATAAGACCTTCCCTACCACCCATAGCATGGAAAAAGAACTCCTGTGG 520975 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||||| | | | ||| |||| || || || || || ||| || || Sbjct 520976 GGTCAGCCCACGCAGGTACGAGTTCTCCACAAACCCTCGACTTTCTGGCCCATAATCATC 521035 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGATACGCTTTCCATCAA 302803 || ||||| || |||| |||| | ||| || | || |||||||||||||||| || | Sbjct 521036 TTTAGTAAAATGAGGCAATGTCC-GATCTACAAACCCAAATGGGATACGCTTTCCTTCCA 521094 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | |||||||| |||| || | | ||||||| || ||||| | ||| || ||||| | Sbjct 521095 CATTCTGCTGCCCCACACAAGCAGTCATCTGTGATATATTGATGAAACTTCCTTTGGATC 521154 Query 302864 CAGCATTTACCAT 302876 |||| | ||||| Sbjct 521155 CAGCTGTCACCAT 521167 Score = 89.7 bits (98), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 156046 AACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| |||||||| ||| || ||||| ||||| || ||||| | ||| || || | Sbjct 17548187 AATTACCCTTCCTCTTGCCGCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCC 17548246 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || | ||| ||||| || || ||||| ||||| ||||||| || | || Sbjct 17548247 GCAGCATTGGCACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTG 17548306 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| || |||| | |||||||| || | |||| || ||| || | Sbjct 17548307 CACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACT 17548366 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||| | ||||| | || ||||||||| |||||||| ||| Sbjct 17548367 CCTTCAAAGTATCATATATTCCTTCAATACTATCATCTTTCAT 17548409 >seq1103 Length=43299053 Score = 120 bits (132), Expect = 9e-22 Identities = 282/416 (68%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| || || || |||||||| ||| || Sbjct 42541612 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 42541553 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || || | || || ||| | | | | || |||||||||||||| ||||| || | Sbjct 42541552 TCC--AAGC--CCTGCTC-CTC-TCTGTCTCCCCACAGCATCAATTTCATCAATAAACAC 42541499 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | |||||| | || | | || | |||| || || || || | |||||| |||| Sbjct 42541498 AATACACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAAC 42541439 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 ||||||| ||| || ||||| || || || | || ||| | |||| || |||| Sbjct 42541438 ACCAACAAACAACTCAACAAACTCTGAGGCAGC-ACATGAGAAAAATGGCACGCCGGCTT 42541380 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||||||| |||| | || || || ||||| ||||| || |||||| || Sbjct 42541379 CTCCAGCAACTGCCCTAGCCAATAAAGTTTTCCCAGTTCCTGGTGGCCCAACTAATA-AA 42541321 Query 289238 CTCCCTTTGGTACTTTT-GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | |||||| | | | || || || || | || || || ||| | |||| ||| || Sbjct 42541320 CACCCTTTTGGAATCTTAGCGCCCAAAGCTGTGTACTTATCGGGGTTTTTTAGAAAATCA 42541261 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | || | | ||| ||||||| | |||| || || ||||||||||| || Sbjct 42541260 ACTACCTCTTGTAATTCCAATTTTGCTTGATCAGCACCAGCCACATCAGCAAATGT 42541205 >seq1030 Length=25649276 Score = 98.7 bits (108), Expect = 3e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 156044 AAAACTACCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| |||| || ||||||||| |||||||| ||||| || ||||| | ||| || || Sbjct 17554251 AAAAATACCCTTTCTCTTGCCACCTCCCTGATCCACATAACGGGCAGTATCATTAAACAC 17554310 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 | ||||| || | ||| |||||||| || || || ||||| ||||||| |||| Sbjct 17554311 CCGCAGCATTGGGACAATGCCATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGT 17554370 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 || |||| || |||| | |||||||| || | |||| || ||| || Sbjct 17554371 TGCACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAACAGCACA 17554430 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | ||| | | || ||||||||| |||||||| ||| Sbjct 17554431 CTCCTTCAAAGTTTCATAGATTCCTTCAATACTATCATCTTTCAT 17554475 >seq1282 Length=25111302 Score = 87.8 bits (96), Expect = 5e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 251468 CCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAAC 251527 ||||| ||| | || ||||| || | |||||||||||| | ||||||||| || || | Sbjct 7978996 CCTTGAGAAAGTGGGAAGCACCATGAGCAATCATACAATCTCTCTCCATTTCTCCAAATC 7979055 Query 251528 GAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGAC 251587 |||| |||||||| |||| | ||||| |||||||| | || ||| | | ||||| Sbjct 7979056 GAAGGCCACCATCCCGAGATCGTCCCTCAGCAGGCTGCCTTGTAAGAATCTGTACAGGAC 7979115 Query 251588 CGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGG 251647 | | || ||| ||||||| ||||| ||||| || | ||||| ||| || Sbjct 7979116 CCCTACCACGAGAATGGATTTTATCATCAACCATGTGCTTCAGTCTTTGGTAATATGTGG 7979175 Query 251648 GACCGATGAAGAT 251660 | || | ||| || Sbjct 7979176 GGCCAAGGAATAT 7979188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471791236987126