Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1229 194 2e-43 seq1030 194 2e-43 seq1282 91.5 2e-12 >seq1229 Length=21133251 Score = 194 bits (214), Expect = 2e-43 Identities = 221/294 (75%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | | |||| | |||||| Sbjct 20050825 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGG 20050766 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| | |||| ||||| ||| ||||| || || ||||||||| Sbjct 20050765 ACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAG 20050706 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| |||| ||||| ||||||| || | || || |||| ||| | Sbjct 20050705 AAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGATTCCCACTGGCGG 20050646 Query 869813 GTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | ||| ||||| |||||||| || ||||| | || || ||||| || ||||| Sbjct 20050645 ATGTCCTGCG-ACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTA 20050587 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||| ||||| | || | |||| |||| || || | | || |||| ||||| Sbjct 20050586 CATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTT 20050533 Score = 129 bits (142), Expect = 7e-24 Identities = 177/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||||| ||||| | |||||||| || | |||||| || ||||||||||||||| Sbjct 20051074 AAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC 20051015 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| || || || || ||| |||||| | || || | ||| || || || || | Sbjct 20051014 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 20050955 Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTG 869389 || || |||||| || | ||||| ||||||||||| || |||||||||| Sbjct 20050954 CC------GTCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTT 20050901 Query 869390 TCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGG 869449 || | ||||||||| | | || ||||||| | | || || | || || || | ||| Sbjct 20050900 TCAAAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGG 20050841 Query 869450 AGCGAATA 869457 ||||| || Sbjct 20050840 AGCGAGTA 20050833 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| ||||| || ||| ||| || |||| || || Sbjct 656526 GCAGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGAC 656467 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||| || |||||||||||||||||| Sbjct 656466 ATGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAAG 656416 >seq1030 Length=25649276 Score = 194 bits (214), Expect = 2e-43 Identities = 223/295 (76%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | |||| || || ||| Sbjct 1351816 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGG 1351757 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||| ||||||||| ||||| ||||||||| |||||||||||| ||| ||||| Sbjct 1351756 ACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAG 1351697 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| ||| ||||| |||||| || | || | | |||||||| || Sbjct 1351696 AAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGG-CG 1351638 Query 869813 GTG-TC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | || ||| || || || ||||| || ||||| | ||| || ||||| || |||| Sbjct 1351637 GAGATCTTGCG-AAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGT 1351579 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||| ||||| | ||| |||| | || ||||| | | ||| || | ||| || Sbjct 1351578 ACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATT 1351524 Score = 113 bits (124), Expect = 6e-19 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| ||||||||||| || ||||| ||||| || ||||| || Sbjct 1352056 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 1351997 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||| ||||| |||| | | ||| || || || || ||| | Sbjct 1351996 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCC------G 1351943 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| || | |||||| ||| || || || | || ||||| ||||||||| Sbjct 1351942 TCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 1351883 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||||||| ||| ||||||| | | ||| |||| || || || | || ||||| || Sbjct 1351882 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTA 1351824 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 || ||||| || ||||| || | |||||||||| ||||||||| || || || | | Sbjct 1352383 TCAAAAAAATTAGTCTTCCCTTGAAGCGAGATCAGCTCCATCCAATCAAAAGGATTCGCC 1352324 Query 868778 GTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATG 868837 ||| |||| || | || |||| | | || | || ||||||||||| ||| Sbjct 1352323 ACACCGTACAGCTTCCCGTACCCAAGCGCACCCAACAATCTATCCGCGACAAACTCTATG 1352264 Query 868838 TACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACA 868897 ||||| | ||| | | | ||||| || | | ||| |||||||| |||| |||| Sbjct 1352263 TACTGACTCATCAATTCTCCATTCATCCCCACCAACGCGCACGGCAGCGCATCGCACACA 1352204 Query 868898 AACTCTTTCTCGATCTCGACGGCCTC 868923 |||||| |||| ||||| || ||||| Sbjct 1352203 AACTCTCTCTCTATCTCCACCGCCTC 1352178 >seq1282 Length=25111302 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 |||||||| ||||| |||| ||| | |||| || |||| ||| | |||| || | Sbjct 955072 GCCGCCAATTACCTGAACATTAAGGGTTTGCTGGA-CTTGACCTGCCAAACTGTTGCAGA 955014 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| ||| | || |||||||||||||||||||| ||||||||| Sbjct 955013 CATGATCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 954962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107024473573166