Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1030 168 1e-35 seq1229 165 1e-34 seq1165 109 9e-18 >seq1030 Length=25649276 Score = 168 bits (186), Expect = 1e-35 Identities = 208/285 (73%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 1352056 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 1351997 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| ||| ||||| ||| | | ||| || ||||| ||| ||| || Sbjct 1351996 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTC---- 1351941 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| || | ||||||| || || || || |||| ||||| ||||||||| Sbjct 1351940 --GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 1351883 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||||| ||| ||| ||| | | ||| |||| ||| || || | || |||||||| Sbjct 1351882 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTAC 1351823 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 1351822 ATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 1351778 Score = 145 bits (160), Expect = 1e-28 Identities = 196/268 (73%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||||||| ||||||| | ||||| |||||||| ||||||||| Sbjct 1351771 GCCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCG 1351712 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| ||||| |||||||| |||||| ||| ||||| |||||| || | || Sbjct 1351711 TCGGAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 1351652 Query 796270 GAGACCCAGTGGACCGTG-TC-GGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||||||| | | | || ||| || || || ||||| || |||||||| || | Sbjct 1351651 GCCTCCCAGTGG-CGGAGATCTTGCG-AAAGATCAACTTCCTCAGCAGTCCAAAACGACG 1351594 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 | ||||| || |||||||| ||||| || || |||| | || ||||||| ||| | Sbjct 1351593 CTTCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATC 1351534 Query 796388 GATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||| ||| || | ||| |||||||| Sbjct 1351533 GATCGGGATTTGGGGCTAGGAGCGGCTC 1351506 >seq1229 Length=21133251 Score = 165 bits (182), Expect = 1e-34 Identities = 209/288 (73%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 ||||| ||||| | |||||||| || | |||||| || || ||||||||||||||||| Sbjct 20051068 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 20051009 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || || || || ||| |||||| | | || | ||| || || || ||| ||| || Sbjct 20051008 AATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGCCGTC- 20050950 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 |||||| || | ||||| || |||||||| || | |||||||| || | | Sbjct 20050949 -----GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAG 20050895 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 |||||||| | | || ||| ||| | | || || | ||| || || | ||||||||| Sbjct 20050894 GCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAG 20050835 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 || | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 20050834 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 20050787 Score = 158 bits (174), Expect = 2e-32 Identities = 199/269 (74%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| |||||||| || |||||||| | | |||| ||||| || ||||| || Sbjct 20050780 GCCTCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCA 20050721 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||| |||||| |||| ||||| ||||||| || | || Sbjct 20050720 TCCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGG 20050661 Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 || |||| ||| |||| ||| | |||||||||||||| || |||||||| || || Sbjct 20050660 GATTCCCACTGGCGGATGTCCTGCGAC-AGGTCGACCTCCTCCGCCGTCCAAAATGAAGC 20050602 Query 796329 CTCGGCCTTTTTGTACATCTCCCATAT--CCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 ||||| || |||||||| ||||| || ||| |||| |||| || |||| || Sbjct 20050601 TTCGGCTTTCTTGTACATTTCCCAGATTTCCG--GGTACTGGATTGGAAACATGCAGAAT 20050544 Query 796387 CGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || | |||||| | |||||||||||| Sbjct 20050543 CGGTCTGGGTTCGGGGTTAGCAGCGGCTC 20050515 >seq1165 Length=25613772 Score = 109 bits (120), Expect = 9e-18 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || ||||||||| |||||| ||| ||| ||| Sbjct 13075315 TGAACTTGGTAACGGCCTTGGTCCCCTCCGACACGGCGTGCTTGGCCAATTCACCGGGCA 13075256 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||||||||||||| | | |||||| |||||| | Sbjct 13075255 AGACCAATCTCACGGCGGTCTGGATCTCCCTCGACGTGATCGTCGGCTTCTTGTTGTACC 13075196 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || || || ||||| | | | |||| || ||||||| || ||||| Sbjct 13075195 TAGCGAGACGAGACGCCTCCTGGGCTAATTTCTCGAAGATATCGTTGATGAAACTGTTCA 13075136 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||| || | ||||| || |||||||| || |||||| Sbjct 13075135 TGATGCCCATGGCCTTGCTGGAGATACCGATATCGGGATGAACCTGCTTCAGGACCTTGA 13075076 Query 1485710 AAA 1485712 ||| Sbjct 13075075 AAA 13075073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916097688363722