Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1165 89.7 4e-13 seq1 89.7 4e-13 >seq1165 Length=25613772 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || || |||||| | || |||||||||||||| |||| ||| |||||||| |||| Sbjct 9951394 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 9951335 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | || ||| | || || || ||||||||||||||||| ||| | ||| |||| || Sbjct 9951334 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCTG 9951275 Query 107769 AG 107770 || Sbjct 9951274 AG 9951273 >seq1 Length=28940139 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || |||| || ||||| ||||| | || || ||||| || ||| | || Sbjct 21032941 TAAGAGGTGGAA--TGCAGATATTTGTGAAAACCCTGACTGGTAAAACTATCACCTTGGA 21032998 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 | ||| | ||||| ||| | | || || |||||| || || || || | Sbjct 21032999 AGTTGAGAGTTCTGATACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGAAT 21033058 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722 || |||||||||||||| |||| ||| || || ||||| || || | | || | Sbjct 21033059 CCCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCT 21033118 Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||||||||| ||||| ||||| | ||| ||||| Sbjct 21033119 TGCTGACTACAACATTCAGAAGGAATCTACCCTTCACTTGGTG 21033161 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || ||| | || || |||||||| ||| | || || ||| Sbjct 21028973 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAAAGCTC- 21029031 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| ||||| || || ||||| | || ||||| Sbjct 21029032 CGATACCATTGATAATGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCA 21029091 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||||||||| ||||| | ||| | || || || || Sbjct 21029092 GCAGAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGGCGCACACTCGCCGATTATAA 21029151 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || ||||| |||| Sbjct 21029152 CATCCAGAAGGAGTCGACCCTGCACTTGGT 21029181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398870003887222