Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq1165 96.9 2e-15 >seq1 Length=28940139 Score = 109 bits (120), Expect = 4e-19 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | |||||||| || || || || || ||| Sbjct 20996271 AAAATCTGCATGCCACCCCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCTGGATG 20996212 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | ||||||||| | || || | |||||| |||||||| || | | ||| Sbjct 20996211 TTGTAGTCTGCAAGTGTGCGTCCATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGC 20996152 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 || ||| | || | ||||| || || |||||| ||| | ||| |||| |||||| Sbjct 20996151 TGGTCTGGTGGGATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTC 20996093 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||| |||| ||||| || || || || | || ||||||||||||||||| Sbjct 20996092 GGAGCTTTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 20996033 Query 33750 A 33750 | Sbjct 20996032 A 20996032 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| || || ||| ||| || || ||||| || |||| Sbjct 21032950 CCACCTCTTAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCA 21032891 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | |||||| || |||||||| | | ||||| ||| | || Sbjct 21032890 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 21032831 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || ||| | ||| |||| |||||| |||||| Sbjct 21032830 ATCCCTTCCTTGTCCTGAATCTTGGCTTTGA-CATTGTCAATAGTGTCGGAGCTTTCCAC 21032772 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| ||||| || || | || |||||||||||||||||| Sbjct 21032771 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 21032723 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || ||||| ||||| | Sbjct 20996032 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGC 20995973 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| |||||||| || | | ||| || ||| | || Sbjct 20995972 AAGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGTGG 20995913 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||||| ||| |||| ||||||| ||||| Sbjct 20995912 GATCCCTTCCTTGTCTTGAATCTTGGCTTTCA-CATTGTCAATGGTGTCGGAGCTTTCCA 20995854 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || ||||| || || || | || |||||||||||||||||| Sbjct 20995853 CCTCAAGAGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 20995804 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||| || ||||| || || | || || | | | || || Sbjct 20996697 ACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 20996638 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| |||||||| | | |||||||||| | || | ||| || ||||| | Sbjct 20996637 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGA 20996578 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||||| | | ||| | |||||| ||| || |||| || || ||||| Sbjct 20996577 ATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGTTTT 20996519 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| |||||||||||||| Sbjct 20996518 TCCGGTGAGGGTTTTCACAAAGATCTGCAT 20996489 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | |||||||| || || || || || |||||||| || | Sbjct 21029428 ACCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGC 21029369 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || || | |||||| || ||||| || | | ||||| ||| | || Sbjct 21029368 AAGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGG 21029309 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATT 33697 | ||||| || || |||||| ||| | ||| |||| |||||| |||| | Sbjct 21029308 GATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTCCGAGCTT---T 21029253 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||| || || || || || || | || ||||||||||| ||||| Sbjct 21029252 CCACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 21029201 >seq1165 Length=25613772 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| ||||||| ||| ||||| ||| || || ||||||||||| | Sbjct 10936352 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC 10936293 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || |||| || || || ||||| |||| ||||||||||| | || Sbjct 10936292 AAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGG 10936233 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||||| || ||||| || | || | ||| | |||||| ||| | Sbjct 10936232 GATCCCTTCTTTATCCTGGATTTT-TGCCTTGACGTTGTCAATGGTGTCAGAGCT---CT 10936177 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | |||||||| || || || | ||||| || ||||||||||| Sbjct 10936176 CGACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 10936125 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| ||| || |||| ||| ||||| || || || ||| Sbjct 12024625 AAAATCTGCATGCCACCCCTCAGACGCAAAACCAGATGAAGAGTTGATTCCTTCTGAATG 12024566 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | ||| || | | | || |||| || || || || || |||||||||||| Sbjct 12024565 TTGTAATCCGCGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGC 12024506 Query 33631 TGATCTTGCGGCACACCTTCTTTGTC 33656 || || |||| | ||||| ||||| Sbjct 12024505 TGGTCCGGCGGAATCCCTTCCTTGTC 12024480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698399500160