Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq965 221 4e-53 >seq965 Length=51047765 Score = 221 bits (244), Expect = 4e-53 Identities = 370/530 (70%), Gaps = 4/530 (1%) Strand=Plus/Plus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | ||| || | ||| | ||||| |||| |||||||| ||||||| Sbjct 18211482 TAACTGGATAACTAGCACTGAAAACTGCCTTTACATTGGTTGGTTTGGTGTTTTGATGAT 18211541 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | | | | || || |||| || ||||| || || ||||| ||||| |||| Sbjct 18211542 CCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTTATTGCTGCTCCTCCAG 18211600 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || ||||| || || || ||||| | || || || ||||||||||| || || | Sbjct 18211601 TAGATATTGACGGTATTCGTGAACCTGCTTCTGGATCTCTACTTTATGGAAATAATATTA 18211660 Query 19689 TATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGG 19748 | || | || | |||| | | || || || | || || ||||| || |||| Sbjct 18211661 TTTCTAGCGCGATTATTCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCGATATGGG 18211720 Query 19749 AAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCC 19808 |||| || ||||||||||| | ||||| || || || | | || | || | | Sbjct 18211721 AAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTAC 18211780 Query 19809 ACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAG 19868 ||||| | ||||| | | ||||||||| || |||||||||||||| | || |||| Sbjct 18211781 ACTTCGTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAG 18211840 Query 19869 GAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCT 19928 | ||| | ||||||||| |||||| || | |||| |||||||| || |||| || | Sbjct 18211841 GTATGCGTCCTTGGATTGCTGTTGCATATTTAACTCCTGTTGCAGCAGCGACTGCTGT-T 18211899 Query 19929 TTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCG 19987 |||| | ||||||| | ||||| || || || || |||| ||||||| | || ||||| Sbjct 18211900 TTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCT 18211959 Query 19988 GGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCAT 20037 ||||| ||||||| |||| | |||||||| || || || ||||| || || Sbjct 18211960 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 18212009 Score = 174 bits (192), Expect = 5e-39 Identities = 378/558 (68%), Gaps = 26/558 (5%) Strand=Plus/Plus Query 19500 AGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAA 19559 ||||||| ||||||| | ||| || | ||||| ||||| |||| |||||||| Sbjct 17866719 AGCTTTTG--TAACTGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTG 17866776 Query 19560 CACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCG 19618 ||||||| || | | | | || || | || || ||||| || || ||||| Sbjct 17866777 TTTTGATGATCCCTACTTTATTGACCGCAACT-TATGTATTTATTATAGCCTTAATTGCT 17866835 Query 19619 GCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGA 19678 ||||| ||| | || ||||| || || | ||||| || || || || ||||||||| Sbjct 17866836 GCTCCTCCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGA 17866895 Query 19679 AACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCT 19736 || || || || | || || | |||| | | ||| || || || | || || | Sbjct 17866896 AATAATATTATTTTTGGTGCGATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTT 17866953 Query 19737 ACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAAC 19796 |||| || |||||||| || ||||||||||| | ||||| || | || | | | Sbjct 17866954 ACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGC 17867013 Query 19797 TTGTGGTCTTCCACTTCCTCATTGGCAT--CT------ATGCTTA--------CATGGGA 19840 | | || | |||||| | |||| | || ||| ||| |||||| Sbjct 17867014 TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGT 17867073 Query 19841 CGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCT 19900 || ||||||||||||| | || || || ||| | ||||||||| |||||| | || Sbjct 17867074 CGTGAGTGGGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCA 17867133 Query 19901 GCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTT 19959 || | |||||||| || |||| || ||||| | ||||||| | ||||| || || || Sbjct 17867134 ACTACTGTTGCAGCAGCGACTGCTGT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTT 17867192 Query 19960 CTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGC 20019 || |||| ||||||| | || ||||| ||||| ||||||| |||| | |||||||| || Sbjct 17867193 TTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGC 17867252 Query 20020 CGAACATAACATTCTCAT 20037 || || ||||| || || Sbjct 17867253 TGAGCACAACATCCTTAT 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148826329255884