Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq965 208 2e-49 >seq965 Length=51047765 Score = 208 bits (230), Expect = 2e-49 Identities = 365/529 (69%), Gaps = 2/529 (0%) Strand=Plus/Plus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | ||| || | ||| | ||||| |||| |||||||| ||||||| Sbjct 18211482 TAACTGGATAACTAGCACTGAAAACTGCCTTTACATTGGTTGGTTTGGTGTTTTGATGAT 18211541 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | | | | || || |||| || ||||| || || ||||| || || |||| Sbjct 18211542 CCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTTATTGCTGCTCCTCCAG 18211600 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || ||||| || || || ||||||| ||||| ||| || |||||||| || || | Sbjct 18211601 TAGATATTGACGGTATTCGTGAACCTGCTTCTGGATCTCTACTTTATGGAAATAATATTA 18211660 Query 28817 TATCGGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGG 28876 | || | || | | || | | || || || | || || ||||| || |||| Sbjct 18211661 TTTCTAGCGCGATTATTCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCGATATGGG 18211720 Query 28877 AAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCC 28936 |||| || ||||||||||| | ||||| || || || | | || | || | | Sbjct 18211721 AAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTAC 18211780 Query 28937 ACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAG 28996 ||||| | ||||| || | ||||||||| || |||||||||||||| | || |||| Sbjct 18211781 ACTTCGTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAG 18211840 Query 28997 GAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTT 29056 | ||| | || |||||| ||| ||||| | | |||| || ||||| || |||| |||| Sbjct 18211841 GTATGCGTCCTTGGATTGCTGTTGCATATTTAACTCCTGTTGCAGCAGCGACTGCTGTTT 18211900 Query 29057 TCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAG 29116 || | |||||||| |||||||||| |||| || | |||||| | || || || | Sbjct 18211901 TCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTG 18211960 Query 29117 GCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCAT 29165 | || ||||||| |||| | || ||||| || || || ||||| || || Sbjct 18211961 GTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 18212009 Score = 161 bits (178), Expect = 3e-35 Identities = 373/557 (67%), Gaps = 24/557 (4%) Strand=Plus/Plus Query 28628 AGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAA 28687 ||||||| ||||||| | ||| || | ||||| ||||| |||| |||||||| Sbjct 17866719 AGCTTTTG--TAACTGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTG 17866776 Query 28688 CACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCG 28746 ||||||| || | | | | || || | || || ||||| || || ||||| Sbjct 17866777 TTTTGATGATCCCTACTTTATTGACCGCAACT-TATGTATTTATTATAGCCTTAATTGCT 17866835 Query 28747 GCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGA 28806 || || ||| | || ||||| || || | |||||||| ||||| ||| || |||||| Sbjct 17866836 GCTCCTCCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGA 17866895 Query 28807 AACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCT 28864 || || || || | || || | | || | | ||| || || || | || || | Sbjct 17866896 AATAATATTATTTTTGGTGCGATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTT 17866953 Query 28865 ACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAAC 28924 |||| || |||||||| || ||||||||||| | ||||| || | || | | | Sbjct 17866954 ACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGC 17867013 Query 28925 TTGTGGTCTTCCACTTCCTCATTGGCGT--CT------ATGCTTA--------CATGGGA 28968 | | || | |||||| | |||| || || ||| ||| |||||| Sbjct 17867014 TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGT 17867073 Query 28969 CGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCA 29028 || ||||||||||||| | || || || ||| | || |||||| ||| |||| ||| Sbjct 17867074 CGTGAGTGGGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCA 17867133 Query 29029 GCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTT 29088 || | || ||||| || |||| |||||| | |||||||| |||||||||| |||| Sbjct 17867134 ACTACTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTT 17867193 Query 29089 AGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCC 29148 || | |||||| | || || || || || ||||||| |||| | || ||||| || Sbjct 17867194 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCT 17867253 Query 29149 GAACATAACATTCTCAT 29165 || || ||||| || || Sbjct 17867254 GAGCACAACATCCTTAT 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146663165167708