Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq965 262 1e-65 seq1229 93.3 1e-14 >seq965 Length=51047765 Score = 262 bits (290), Expect = 1e-65 Identities = 376/527 (71%), Gaps = 2/527 (0%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||| | ||||| || || |||||||| ||||||| | Sbjct 18211484 ACTGGATAACTAGCACTGAAAACTGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCC 18211543 Query 18791 CGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTA 18849 | | | | | || ||| | ||| || ||||| ||||| |||||||| ||||| ||| Sbjct 18211544 CTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTTATTGCTGCTCCTCCAGTA 18211602 Query 18850 GACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATA 18909 || ||||| || || || || |||| | | || ||| ||||||||||| || || || Sbjct 18211603 GATATTGACGGTATTCGTGAACCTGCTTCTGGATCTCTACTTTATGGAAATAATATTATT 18211662 Query 18910 TCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAA 18969 || | || | |||| | | || || || | || || ||||| || |||||| Sbjct 18211663 TCTAGCGCGATTATTCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCGATATGGGAA 18211722 Query 18970 GCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCAC 19029 || || ||||||||||| | ||||| || || || | | || | || | ||| Sbjct 18211723 GCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACAC 18211782 Query 19030 TTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGG 19089 ||| | ||||| || | ||||||||| || |||||||||||||| | || ||||| Sbjct 18211783 TTCGTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGT 18211842 Query 19090 ATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTC 19149 ||||| ||||||||| |||||| || | | |||||||||| ||||| |||| || ||| Sbjct 18211843 ATGCGTCCTTGGATTGCTGTTGCATATTTAACTCCTGTTGCAGCAGCGACTGCTGTTTTC 18211902 Query 19150 CTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGT 19209 | |||| ||| | |||||||| ||| || | ||||||| | || || |||| Sbjct 18211903 TTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGT 18211962 Query 19210 ACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCAT 19256 || ||||||| |||| |||||||||||||||| || |||||||| || Sbjct 18211963 ACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 18212009 Score = 232 bits (256), Expect = 2e-56 Identities = 385/552 (70%), Gaps = 22/552 (4%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| ||||| |||| ||||| || ||||| ||||| || || |||||||| || Sbjct 17866722 TTTTGTAACTGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 17866781 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | || ||| | ||| || ||||| ||||| |||||||| || Sbjct 17866782 ATGATCCCTACTTTATTGACCGCAACT-TATGTATTTATTATAGCCTTAATTGCTGCTCC 17866840 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| |||| ||||| || || | || |||||| | || ||| ||||||||||| || Sbjct 17866841 TCCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAAATAA 17866900 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || | || || | |||| | | ||| || || || | || || ||||| Sbjct 17866901 TATTATTTTTGGTGCGATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCG 17866958 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || |||||||| || ||||||||||| | ||||| || | || | | || | Sbjct 17866959 ATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTAATT 17867018 Query 19021 GTCTTCCACTTCCTCATTGGCGT--CT------ATGCTTA--------CATGGGACGCGA 19064 || | |||||| | |||| || || ||| ||| |||||| || || Sbjct 17867019 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCGTGA 17867078 Query 19065 GTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCC 19124 ||||||||||| | || || || ||||| ||||||||| |||||| | ||| || | Sbjct 17867079 GTGGGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCAACTAC 17867138 Query 19125 TGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGA 19184 |||||| ||||| |||| || ||| | |||| ||| | |||||||| ||| || Sbjct 17867139 TGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGA 17867198 Query 19185 CGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACA 19244 | ||||||| | || || |||||| ||||||| |||| |||||||||||||||| || Sbjct 17867199 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 17867258 Query 19245 TAACATCCTCAT 19256 |||||||| || Sbjct 17867259 CAACATCCTTAT 17867270 >seq1229 Length=21133251 Score = 93.3 bits (102), Expect = 1e-14 Identities = 215/322 (67%), Gaps = 29/322 (9%) Strand=Plus/Plus Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA-CATCCTCATGCACCCGTT 19265 ||||| ||||||| || | |||||||| ||||||| | | |||||| |||| | || Sbjct 7300600 GGTACTTTCAACTTCACGATTGTATTCGAGGCTGAGCTCCATCATCCTTGTGCATTCATT 7300659 Query 19266 CCACATGCTC-------GGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGC 19318 |||||| | || | ||||||| ||| ||||| || | || || Sbjct 7300660 GCACATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCAAT----------GC 7300709 Query 19319 ACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAAC 19377 |||||| | || || || | | ||| | || ||||| || ||| | | ||||| || Sbjct 7300710 ACGGTTACTTGGTAACCTC-TAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAG 7300768 Query 19378 TATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTAT 19437 | | |||| ||||| | ||| |||| ||||| | ||||| ||||||||| ||| Sbjct 7300769 GAAAGATACAGATTTGGTCCAGAGAAAGAAACTTACGATATTGTATCTGCTCATGTTTAT 7300828 Query 19438 TTTGGTCGGCTTATT-----TTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATT 19492 ||||| |||||| |||| || || |||| |||| | |||| |||||| Sbjct 7300829 TTTGG----CTTATTGATACTTCCGATATGCTGGTTTCAGCAATTTTCATTCTTTACATT 7300884 Query 19493 TCTTTTTGGCTGCTTGGCCTGT 19514 |||| | | |||||||||||| Sbjct 7300885 TCTTCCTAGATGCTTGGCCTGT 7300906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141146456753484