Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1229 118 1e-21 seq1 84.2 2e-11 >seq1229 Length=21133251 Score = 118 bits (130), Expect = 1e-21 Identities = 341/517 (66%), Gaps = 16/517 (3%) Strand=Plus/Plus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 ||||| |||||| |||||||||| | |||||| | || |||||||| || | | Sbjct 20050905 GTGCCGTGCGTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCG---GAG 20050961 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 || | || ||| | || | || || || || ||||| | || || ||||||||| Sbjct 20050962 ACATTCGCGGAGAGACTGATAGCGTTTGCCTGCGTGGAAGGGATATTCTTCTCGGGCAGT 20051021 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 || ||| || |||| | |||| || ||||||||||||| || ||| ||| Sbjct 20051022 TTCTGCGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAAC 20051081 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997 ||| | |||||||| || |||||||| ||| || || ||||| | | |||| | Sbjct 20051082 GAGCTAATCTCGCGAGATGAAGGACTCCACTGCGATTTCGCGTGCTTGTTGTACAGCTTG 20051141 Query 46998 CGCGTGAATGAGAAATTAAACTCGGA-CACGATCCTGAGCATGTTTAGGGAGGCGGTGAG 47056 | ||| | ||||||| | ||| | || | || | || | | |||||||||| Sbjct 20051142 C---TGAGGAACAAATTAAGCGAGGAGCGCG-TGATGGGGATAGTGAAGGAGGCGGTGGA 20051197 Query 47057 CATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGGCATGAACGCA 47114 || || | |||||| | |||| |||||||| ||| ||| |||| ||||||| Sbjct 20051198 GATAGAGAGGGAGTTCGT--GTGCGACGCGCTGCCGTGCGCATTGGTGGGGATGAACGGG 20051255 Query 47115 CAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAA 47174 || ||| | | || || ||||||||||| ||| | |||||| |||||| Sbjct 20051256 GCGTTGATGAGTCAGTACATAGAGTTTGTGGCAGATAGGTTGTTGGGCGCGCTCGG--GT 20051313 Query 47175 CCGAAATATTTTAATGCTCG--TAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGG 47232 || | | || || | ||||||||||| | ||| | |||||||| | | Sbjct 20051314 GCGGGAAGGTGTACGGCGTGACGAATCCGTTTGATTGGATGGAGTTGATTTCGCTGCAAG 20051373 Query 47233 GCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 | || || ||||| || ||||| ||||||| || || Sbjct 20051374 GGAAGACGAATTTCTTTGAGAAGAGAGTCGGGGAATA 20051410 >seq1 Length=28940139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | ||||||| || || ||||| || || | || || ||| ||| Sbjct 20996013 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGCAAGTGTGCGACCATCCTCG 20995954 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||||| | |||| || | |||||| ||||| || || ||||| || || | Sbjct 20995953 AGCTGTTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGA 20995894 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||||| | || | || |||| ||||| || | || | ||| || Sbjct 20995893 ATCTTGGCTTTCACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGAGTAATCGTCTTG 20995834 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || |||| || |||||||| Sbjct 20995833 CCAGTGAGGGTCTTTACAAAGATCTGCAT 20995805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476602871219280