Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 6e-12 seq1165 82.4 7e-11 >seq1 Length=28940139 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | ||||||||| | || || | || || ||| Sbjct 20996488 CATGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTC 20996547 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| ||||||| || || |||||||| || || ||||| Sbjct 20996548 TGACACCATCGACAACGTGAAAGCAAAAATTCAGGACAAGGAGGGTATCCCACCAGATCA 20996607 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||||| | || || || || ||||||| || | | | || || || Sbjct 20996608 GCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAA 20996667 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || ||||||||||| |||| || || Sbjct 20996668 CATCCAGAAAGAATCCACTCTTCACTTGGT 20996697 >seq1165 Length=25613772 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||| ||||| | ||||| || | ||||| ||||||| || | Sbjct 10935894 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 10935953 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||| || ||||| | || || || || || || ||||| || ||||| || Sbjct 10935954 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 10936013 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 ||||| | ||||| | | || || ||||||||||| | | | | | ||||||| Sbjct 10936014 CAGCAGCGTCTCATCTTTGCTGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 10936073 Query 25352 AATATTCAAAAAGAATCCAC 25371 || ||||||||||||||||| Sbjct 10936074 AACATTCAAAAAGAATCCAC 10936093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445086621975360