Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1229 315 1e-79 seq1030 271 1e-66 seq1165 86.0 9e-11 >seq1229 Length=21133251 Score = 315 bits (348), Expect = 1e-79 Identities = 412/563 (73%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||||| | ||||| |||| || | |||| || |||| |||| | Sbjct 20050515 GAGCCGCTGCTAACCCCGAACCCAGACCGATTCTGCATGTTTCCAATCCAGTACCCGGAA 20050574 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| |||| || || |||||||| || |||||||||||||| Sbjct 20050575 ATCTGGGAAATGTACAAGAAAG-CCGAAGCTTCATTTTGGACGGCGGAGGAGGTCGACCT 20050633 Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | ||| | ||| ||| |||| || || | || ||||||| || ||||||| || Sbjct 20050634 -GTCGCAGGACATCCGCCAGTGGGAATCCCTAACCGCCGACGAGAAACACTTCATCACGC 20050692 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| |||||||| || ||||||| ||||| ||||| ||| ||||| |||| | | Sbjct 20050693 ACGTGCTCGCCTTCTT-CGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCCGCCAGG 20050751 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||||||| |||||| | | ||||| ||| || ||||| ||||| ||||||||| Sbjct 20050752 TTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATC 20050811 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| |||| ||||||||||| | || || ||| | || || | | | Sbjct 20050812 GAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAACTCCGAC 20050871 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 || ||| || | | ||||||||| | || |||||||||| || ||||||||||| Sbjct 20050872 GAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTGCCAAAAAGGCCGAT 20050931 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGC 1456193 ||||| | || |||||| || ||| || || || || ||| | || | | Sbjct 20050932 TGGGCCCTAAATTGGATC------GACGGCTCGGAGACATTCGCGGAGAGACTGATAGCG 20050985 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 |||||| |||| || || || || |||||||||||||||||||| || |||||| | || Sbjct 20050986 TTTGCCTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTGAAA 20051045 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 20051046 AAGCGCGGGTTAATGCCGGGCCT 20051068 >seq1030 Length=25649276 Score = 271 bits (300), Expect = 1e-66 Identities = 405/562 (72%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||| || || | | | ||||| | |||| | ||||||| || | |||| | Sbjct 1351506 GAGCCGCTCCTAGCCCCAAATCCCGATCGATTTTG-CATGTTCCCGATTCAGTACCCACA 1351564 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || |||||||||||| | |||| |||| || || |||||||| || ||||| || || | Sbjct 1351565 AATTTGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATC 1351623 Query 1455835 TCGGCGCC-GA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | ||| || | | | |||||||| | | || | || |||||| || ||| ||| Sbjct 1351624 TTT-CGCAAGATCTCCG-CCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCAC 1351681 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||| |||||||| || ||| ||| ||| |||||||| ||||||||| ||||| Sbjct 1351682 GCACGTGCTCGCCTTCTT-CGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGAA 1351740 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||| |||||||| | | ||||| || || ||||| ||||| ||||||| Sbjct 1351741 GGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAAATCGCCA 1351800 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| ||||||||||| |||| |||||||| || | || || ||| |||| ||| | | Sbjct 1351801 TCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCG 1351860 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| ||| ||| ||||||| ||||||||| ||||| || | || || || ||| Sbjct 1351861 ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCA 1351920 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 |||||| | || |||||| || ||| || ||||| || ||| | | ||| Sbjct 1351921 CGTGGGCGTTAAATTGGATC------GACGGCTCGGAGACTTTCGCGGAGAGATTAATCG 1351974 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| ||||| || || ||||| || ||||| ||||| || |||||||||| Sbjct 1351975 CGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCA 1352034 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | |||||||| | ||||| || Sbjct 1352035 AAAAGCGCGGGTTAATGCCGGG 1352056 >seq1165 Length=25613772 Score = 86.0 bits (94), Expect = 9e-11 Identities = 156/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 |||||| || |||||||| || ||| | || | ||| |||| |||| ||||| Sbjct 13075077 CAAGGTCCTGAAGCAGGTTCATCCCGATATCGGT-----ATC-TCCAGCAAGGCCATGGG 13075130 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||||||||| || ||||||| || |||| | | | ||||| ||| || Sbjct 13075131 CATCATGAACAGTTTCATCAACGATATCTTCGAGAAATTAGCCCAGGAGGCGTCTCGTCT 13075190 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095 || | | ||||||| |||||| || | |||||||||||||||||| | | Sbjct 13075191 CGCTAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGATT 13075250 Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||| ||| ||| |||||| ||||||||| || ||||| |||| Sbjct 13075251 GGTCTTGCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGGGGACCA 13075297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177676360330476