Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1229 134 2e-26 seq1030 129 8e-25 seq1103 118 1e-21 >seq1229 Length=21133251 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | |||||| | |||| | || | |||||| || | ||| ||| Sbjct 17548207 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 17548266 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| | |||||||||||| ||||||||||||| |||| ||||| || || || Sbjct 17548267 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 17548326 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 17548327 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 17548386 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 17548387 CCTTCAATACTATCATCTTTCATG 17548410 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | ||| |||||||| || || |||||| || ||| | || || | Sbjct 17548572 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 17548631 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||||| || || || || || ||||| || | || || | ||||||| Sbjct 17548632 TATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGCAACCCTCATCAAC 17548691 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||| || |||| |||||| ||| | | ||||| ||||| || | ||||| Sbjct 17548692 ATATGTTGGGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAGG 17548751 Query 70171 GTTTTAAACCCAAAATA 70187 ||||| || |||||||| Sbjct 17548752 GTTTTGAAGCCAAAATA 17548768 >seq1030 Length=25649276 Score = 129 bits (142), Expect = 8e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | |||||||||||| || ||||||||| ||| || | || || Sbjct 17554602 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 17554661 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| |||||| || || ||||| || |||||||| || | || | |||||| Sbjct 17554662 GTATGTTTTAATAGCAGAATCAATATCATCCTTGTGAATTCCAATAGATACCCTCATCAA 17554721 Query 70110 CATATGCTGAGGTCGTTCTAC 70130 |||||||||||||| |||||| Sbjct 17554722 CATATGCTGAGGTCTTTCTAC 17554742 Score = 120 bits (132), Expect = 4e-22 Identities = 566/892 (63%), Gaps = 14/892 (2%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| ||||| ||||| | || || ||||||||||| || |||| | || || Sbjct 1352407 TTTTGATATTCCCCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGAAGCGAGATCAGC 1352348 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||| ||||| | || || || | || | | | | Sbjct 1352347 TCCATCCAATCAAAAGGATTCGCCACACCGTACAGCTTCCCGTACCCAAGCGCACCCAAC 1352288 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||||||| || ||||| |||||||| |||||| ||| | |||||| || | | Sbjct 1352287 AATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCAAC 1352228 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || || || || | ||||||| | || || || || ||||| | | || | Sbjct 1352227 GCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAAC 1352168 Query 39566 GATGTTACTACCTCATCACTCGGT---GGATGCAATAAA-TGTTTAAACATTAAGCAGGC 39621 | | ||| ||| || || | | ||||||| ||| ||| | ||| || Sbjct 1352167 GCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAGGCACGC 1352112 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 ||| || || || || |||||||||| || || ||||| || ||||| | ||| || Sbjct 1352111 GAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGG 1352052 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGC 39740 ||||| || |||||||||||||||||||| || |||||| | || || ||||| || | Sbjct 1352051 CATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAAAAACTCCCTGAGAAGAAAATCC 1351993 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTATCATTATGTATCCA 39798 | || || ||||| || | | |||||| || || || | | | ||||| Sbjct 1351992 CCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC--CGTCGATCCA 1351935 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 || ||||| |||||||| || || || | || || || || | |||||| Sbjct 1351934 ATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAG 1351875 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 | | ||||| || ||||| | || || |||| | ||| |||||||| || Sbjct 1351874 ACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGA 1351815 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 |||||||| || || || || || || ||||| || | || || | | || || Sbjct 1351814 GTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGGAC 1351755 Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 ||| | || ||| | || | || || || || || || || || || || Sbjct 1351754 CTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAA 1351695 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT 40098 || | || || | | || | || || || | || | | ||||| || Sbjct 1351694 GGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAG 1351635 Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158 ||||| || | ||| ||||| ||||| |||||||||||||| || || || |||||||| Sbjct 1351634 ATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACAT 1351575 Query 40159 GTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 | ||| || | | || || || || || || ||||| || |||||| Sbjct 1351574 TTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATTT 1351523 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||||||||| | || | |||||| | |||| | || | |||||| || | ||| ||| Sbjct 17554273 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 17554332 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || ||||||||| |||||||||||| |||| ||||| || || || Sbjct 17554333 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 17554392 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 17554393 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 17554452 Query 69931 CCCTCTATGCTATCATCTATCAT 69953 || || || ||||||||| |||| Sbjct 17554453 CCTTCAATACTATCATCTTTCAT 17554475 >seq1103 Length=43299053 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | |||| ||||||| |||| | ||| |||||||| | ||| || Sbjct 38888368 TCCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCC 38888309 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || |||||||||||| || ||||| ||| || || |||||| ||| || Sbjct 38888308 ATTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGA 38888249 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 ||||| |||||||| || ||| || | |||||| |||| || |||||||| Sbjct 38888248 GAGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATAT 38888189 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || ||||| |||||| ||||| | |||||| |||||| Sbjct 38888188 GCCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 38888146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686896796268720