Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1165 134 1e-26 seq1282 113 4e-20 seq1030 113 4e-20 seq965 113 4e-20 seq1 102 7e-17 >seq1165 Length=25613772 Score = 134 bits (148), Expect = 1e-26 Identities = 179/248 (72%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | |||| ||| | ||| || || ||||| |||||||| ||| Sbjct 12024159 TGCCTCCACGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGG 12024100 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||||||||||||||| |||||| | || |||||||| || ||||| | Sbjct 12024099 CCAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAG 12024040 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | | || | ||||| | | || | Sbjct 12024039 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 12023980 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 |||| ||||| || | ||||| || || |||||||| ||||| ||||| || ||||| Sbjct 12023979 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT--CTTTTAAAA 12023922 Query 27259 ATTTATTA 27266 ||| ||| Sbjct 12023921 GTTTCTTA 12023914 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || ||||||||||| ||||| ||| || |||| |||||||||| || Sbjct 10936100 ATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTG 10936041 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || || || | ||||||||||| || |||||||| | ||||| || || |||||| Sbjct 10936040 CTTCCCAGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTT 10935981 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | | || | ||||| | | || ||||| || || || | ||||| || Sbjct 10935980 GGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGT 10935921 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || ||||||||||| || ||||| Sbjct 10935920 GAGGGTTTTCACAAATATCTGCAT 10935897 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || || | ||||| |||| |||||||| || ||| Sbjct 10317635 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCG 10317576 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| || ||||| || | || || || || |||||| || Sbjct 10317575 GCGAAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTG 10317516 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || ||||| || | ||||| |||| |||| Sbjct 10317515 ACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTT 10317456 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 10317455 TTCACAAAGATCTGCAT 10317439 >seq1282 Length=25111302 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| || ||| || |||| |||||||| || || Sbjct 21394920 GTTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGCTTTCC 21394978 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 21394979 GGCGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTT 21395038 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || ||||| ||||| | || ||||| || || Sbjct 21395039 GACATTGTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGT 21395098 Query 27230 TTTCACAAAGATTTGCATAGCTGC 27253 |||||| ||||| ||||| ||||| Sbjct 21395099 TTTCACGAAGATCTGCATGGCTGC 21395122 >seq1030 Length=25649276 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| || ||| || |||| |||||||| || || Sbjct 22532793 GTTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGCTTTCC 22532735 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 22532734 GGCGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTT 22532675 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || ||||| ||||| | || ||||| || || Sbjct 22532674 GACATTGTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGT 22532615 Query 27230 TTTCACAAAGATTTGCATAGCTGC 27253 |||||| ||||| ||||| ||||| Sbjct 22532614 TTTCACGAAGATCTGCATGGCTGC 22532591 >seq965 Length=51047765 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| || | | ||| ||||||||||||| || ||| Sbjct 46933569 GTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGCCCGTCTTCGAGCTGCTTGCCG 46933510 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | |||||| || || |||||| || Sbjct 46933509 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTG 46933450 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || | ||||| | || ||||| || ||| Sbjct 46933449 ACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 46933390 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 46933389 TTCACGAAGATCTGCAT 46933373 >seq1 Length=28940139 Score = 102 bits (112), Expect = 7e-17 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || || || ||||| ||||| || ||| ||| | || || Sbjct 20995785 ACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCAGCGAGTGT-GCGACCATCCTC 20995727 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||||||| || | || || | ||| ||||| || || | || || || || Sbjct 20995726 GAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTG 20995667 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| ||| | | || | ||||| | | |||||| || || ||||| | || Sbjct 20995666 GATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTT 20995607 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || ||||||||||||||||||||||| ||||| Sbjct 20995606 GCCGGTGAGAGTTTTCACAAAGATTTGCAT--CTGCT 20995572 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || ||||||| | ||| ||||| || || | |||||| || Sbjct 20996643 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 20996584 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || ||||| | | || | ||||| | |||||| || ||||| || Sbjct 20996583 TCCTGAATTTTTGCTTTCACGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATT 20996524 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || || |||||||||||||| ||||| Sbjct 20996523 GTTTTTCCGGTGAGGGTTTTCACAAAGATCTGCAT 20996489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424927159914576