Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1030 95.1 1e-14 seq616 89.7 6e-13 >seq1030 Length=25649276 Score = 95.1 bits (104), Expect = 1e-14 Identities = 367/568 (65%), Gaps = 13/568 (2%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||||||||| || || ||||| | || || ||||| | || ||||| | || Sbjct 1352102 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 1352043 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 1352042 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 1351983 Query 130147 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 130205 || ||||| | | | ||| || |||| | | | || | ||| || | || Sbjct 1351982 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAATTTAACG 1351927 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265 ||||| || || || ||| || || || |||| ||| || | |||||| |||| Sbjct 1351926 CCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTCT 1351867 Query 130266 TTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACC 130324 |||| | ||| ||||||||||| | |||| || || || ||||| |||| Sbjct 1351866 TTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA-- 1351810 Query 130325 ATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT-CA 130381 ||| ||||| || | ||||||| | ||| || ||| | ||| |||| | Sbjct 1351809 TGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGGACCTCCG 1351750 Query 130382 TCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 || || || || ||||| | || || || ||||| | || || || || Sbjct 1351749 TCATGAACCTT-CCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGGCG 1351691 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCC 130501 || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 1351690 AGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGATCT 1351631 Query 130502 TTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCC 130561 | ||| ||||| || ||||| ||||||||| | || || ||||| || | |||| Sbjct 1351630 TGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCC 1351571 Query 130562 CAGAGGTGGGGATACTTCAGGGGGAACA 130589 || | || || |||| | ||||||| Sbjct 1351570 CAAATTTGTGGGTACTGAATCGGGAACA 1351543 >seq616 Length=36375926 Score = 89.7 bits (98), Expect = 6e-13 Identities = 266/403 (66%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 11420567 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 11420626 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGT 14230 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 11420627 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 11420684 Query 14231 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC-ACGGGC 14289 || | || ||||| ||||||||||| | || || || || || ||| || || | Sbjct 11420685 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 11420744 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 ||| ||| | |||||| ||||| ||||| ||||| ||||||||||| ||||| | Sbjct 11420745 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCAACACCAACAAACATCTCAACAAACTC 11420803 Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 | | | | || | || || || || | |||||| || || || ||| || | Sbjct 11420804 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 11420862 Query 14409 GGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCAC 14468 | |||||||| || ||||| || ||||||| |||| ||| || | || ||| Sbjct 11420863 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTTTGGAATACGAGCTCCAA 11420922 Query 14469 TGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTC 14511 | || | | ||||| | |||||||| ||||| | ||| Sbjct 11420923 TAGCAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTTC 11420965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618424392844880