Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq616 147 3e-30 seq1030 95.1 1e-14 seq1103 93.3 5e-14 seq1229 86.0 7e-12 >seq616 Length=36375926 Score = 147 bits (162), Expect = 3e-30 Identities = 313/460 (68%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 11420549 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 11420608 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| || || || | |||||||||| || | | Sbjct 11420609 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 11420666 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 11420667 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 11420726 Query 9734 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || | | ||| ||| ||||| || || | || || |||||||| Sbjct 11420727 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCTCGGACTCTAGATGCACCAACACCAAC 11420785 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 11420786 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAG 11420844 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| || ||| ||||||||||| || || ||||| ||| |||| || |||| Sbjct 11420845 CAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCT 11420904 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 |||||| || ||| | || |||||||||| | |||||| || ||||| | || Sbjct 11420905 TTGGAATACGAGCTCCAATAGCAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTT 11420964 Query 9972 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 | || || | ||| || | |||| || ||||||| Sbjct 11420965 CCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 11421004 >seq1030 Length=25649276 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGG 104205 |||| || ||| ||||| ||||||||||||||| | ||| || | || || | | || Sbjct 17554808 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 17554749 Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| | |||| || ||| | ||||| ||| | || | || || ||||| ||| Sbjct 17554748 AAGGTTG-TAGAAAGACCTCAGCATATGTTGATGAGGGTATCTATTGGAATTCACAAGGA 17554690 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 || |||||||||| | | |||||| | | |||||||||| | ||||| || || Sbjct 17554689 TGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCCATGC 17554630 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | | || || || || |||||||| || ||||| ||||| Sbjct 17554629 ATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 17554591 >seq1103 Length=43299053 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 104197 ||||| | ||||||| ||||||||| ||||||||||||||| | || ||| | Sbjct 38887799 AGAGATTTTGACTTTGATTATTTTGGCTTCAAAACCCTTGAGAGGTCGTACCTTTTGAAG 38887858 Query 104198 CTCGATGGT-GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || || | ||| | |||| ||||| ||||||| ||| | || | | ||||| Sbjct 38887859 ATGGACAGTAGAGTTG-TAGAAAGGCCACAACACATGTTGATGAGGGTTTCTGTTGGTAT 38887917 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| || |||| |||||||| || | |||||| | |||||| || | ||| Sbjct 38887918 TCACAAAGATGACACTGATTCTGCTCTGAAAACATACCATTTGATGTCTCAGCATTGGTT 38887977 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||| || || |||||||| |||||||| || || ||| ||||| Sbjct 38887978 CACTCATGCTACTCCAACCCTTTTCAATGCAGGCACTCCACAGCCCCA 38888025 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/217 (70%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 42541612 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 42541555 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 42541554 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 42541495 Query 9731 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || ||| || || | |||| ||| | ||||| ||| || | ||||| || Sbjct 42541494 CACGGTGCCTT--CGATTTGGCCTTCTCAAACAAATCCCT--CACTCTGGATGCGCCAAC 42541439 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 ||||||||||| ||| ||||| | || ||| | |||| Sbjct 42541438 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACAT 42541402 >seq1229 Length=21133251 Score = 86.0 bits (94), Expect = 7e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATG 104204 |||| || ||||||||| |||||||||| |||| | ||| |||| || | | | | | Sbjct 17548777 GACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAGGTC-CAAGG 17548719 Query 104205 GTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGG 104264 ||| | |||| || || | ||||| ||| | || || | || ||||| || Sbjct 17548718 AAAAGTTG-TAGAAAGACCCCAACATATGTTGATGAGGGTTGCTGTTGGGATTCACAAGG 17548660 Query 104265 AAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACG 104324 | ||||||||||||| | | |||||| | | |||||| ||| | ||| | || | Sbjct 17548659 ATGACATTGATTCTGCTATCAAAACATACCATATGATGTCTCAACGATGGTTTACCCATG 17548600 Query 104325 CAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || | || || || || |||||||| ||||||||| |||| Sbjct 17548599 CATCTCCCACACTTTTTAATGCTGGAACACCAAGAGCCCA 17548560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250607517520