Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1229 150 2e-31 seq1030 105 7e-18 >seq1229 Length=21133251 Score = 150 bits (166), Expect = 2e-31 Identities = 380/564 (67%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| |||||||| | |||||| ||| Sbjct 20050554 TTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTTGG 20050613 Query 59622 TCCGTCGAGGAGATTGACCT--CGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACG 59679 | | |||||| | ||||| ||| ||| | | | | ||||| || | || Sbjct 20050614 ACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAG--TGGGAATCCCTAACCGCCG 20050671 Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739 ||||| | || ||||||| | || || ||||||||||| || |||||||| || Sbjct 20050672 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCC 20050731 Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 | ||||| | | | | || || || ||||| | ||||||| || | |||| Sbjct 20050732 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 20050791 Query 59800 ACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 ||| | || ||| || |||| ||||||||||| | |||||||||| | | || Sbjct 20050792 ACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAA 20050850 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | || | || | | || || ||| || | | | || || ||| | || ||| | || Sbjct 20050851 ACGTACATAAAAAACTCCGACGAAAAGAGCCGCT-TATTTCGCGCCTTTGAAACGGTGCC 20050909 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 || ||| |||| || || |||||| | | ||||| || || |||| |||| Sbjct 20050910 GTGC-GTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGA--CATT 20050966 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | || ||||| ||||| ||||||||||| || |||||||| ||| ||||| Sbjct 20050967 CGCGGAGAGACTGATAGCGTTTGCCTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTG 20051026 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || ||| | |||||||| || | ||||||||||| | ||||| |||||||| Sbjct 20051027 CGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGCT 20051086 Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118 || || || || || || ||||| Sbjct 20051087 AATCTCGCGAGATGAAGGACTCCA 20051110 >seq1030 Length=25649276 Score = 105 bits (116), Expect = 7e-18 Identities = 295/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| |||| ||| ||| | || || ||||||||||| || || || || || Sbjct 1351662 GACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTC 1351721 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || || | | | | || | ||| |||||| | |||||||| || | ||| Sbjct 1351722 CTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTTC 1351781 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | || ||| || |||| ||||||||||| | ||||||||| | | || Sbjct 1351782 TACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 1351840 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | | |||| || | || || ||| |||| || | ||||| |||||| | || Sbjct 1351841 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 1351900 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 | || || | | ||||| ||||| | | ||||| || || |||| | || Sbjct 1351901 CTGC-GTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACT--TT 1351957 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | | || || ||||| |||||||| || || |||||||| || || || Sbjct 1351958 CGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 1352017 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || |||||||||||||| || | |||||||| | | ||||| |||||| | Sbjct 1352018 CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTT 1352077 Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118 ||| || || || ||||| ||||| Sbjct 1352078 GATCTCGCGAGATGAGGGTCTCCA 1352101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548515214529120