Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1030 89.7 6e-13 seq1282 82.4 8e-11 seq965 82.4 8e-11 >seq1030 Length=25649276 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 |||| ||| || || || | |||||||||||| || |||||||||| | |||||| Sbjct 1352408 CTTTTGATATTCCCCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGAAGCGAGATCAG 1352349 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTC---TCCCCAAACTGTGC 74572 ||||||||| || ||||| ||| ||||||| | ||||| | ||||| | | Sbjct 1352348 CTCCATCCAATCAAAAGGATTCGCCACACCGTACA---GCTTCCCGTACCCAAGCGCACC 1352292 Query 74573 CATGAGGCGATCCGCCACAAATTGAATGTACTG---CGTCATTTCTCCCGCATCCATGCC 74629 || | | |||||| ||||| | |||||||| | ||| ||||| ||| ||| || Sbjct 1352291 CAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTC---CATTCATCCC 1352235 Query 74630 GATGAGTTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTC 74677 | | ||||||||| || ||| | |||||| ||||| | ||| Sbjct 1352234 CACCAACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTC 1352187 >seq1282 Length=25111302 Score = 82.4 bits (90), Expect = 8e-11 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 || |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| | Sbjct 1100479 CAAACTGCTCTCGTTGAGAGTCGAACTCAG-ACCTCCCGCTTACTAAACGGGTGCTCTAA 1100537 Query 79679 CCAATTGAGCTACGAAAGC 79697 |||| |||||||||| ||| Sbjct 1100538 CCAACTGAGCTACGAGAGC 1100556 >seq965 Length=51047765 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 39756373 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 39756432 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 39756433 AACTGAGCTACGAGAGC 39756449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206437400400