Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq965 304 2e-77 seq1107 158 1e-33 seq110 158 1e-33 seq81 158 1e-33 >seq965 Length=51047765 Score = 304 bits (336), Expect = 2e-77 Identities = 369/500 (74%), Gaps = 2/500 (0%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||||||||||||||| | ||||| || | | | || || | | ||| Sbjct 18211511 TTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 18211569 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || |||||||| || || || || ||||| ||||||||||| ||||| | Sbjct 18211570 TTTATTATCGCCTTTATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGCT 18211629 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| |||||||| || || || || | || | | || | || | Sbjct 18211630 TCTGGATCTCTACTTTATGGAAATAATATTATTTCTAGCGCGATTATTCCTACTTCTACA 18211689 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || ||||| || |||||||| ||| | ||||| |||||| | ||| Sbjct 18211690 GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 18211749 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | || ||| | | ||||||| Sbjct 18211750 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCGTAATTGGTGTAGCTTGTTACATG 18211809 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | ||||| |||||||||||||| ||||||||| Sbjct 18211810 GGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGTCCTTGGATTGCTGTTGCATAT 18211869 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 | | || || | ||||||| || |||||| | |||| ||| ||||||||||| | Sbjct 18211870 TTAACTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 18211929 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || || || ||||| |||||||| ||| |||||||||| Sbjct 18211930 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 18211989 Query 176626 GCAGAGCACAACATTCTAAT 176645 || ||||||||||| || || Sbjct 18211990 GCTGAGCACAACATCCTTAT 18212009 Score = 246 bits (272), Expect = 4e-60 Identities = 385/550 (70%), Gaps = 18/550 (3%) Strand=Plus/Plus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| | ||| | || | ||| | ||| | ||||| |||||||||||||||| | Sbjct 17866722 TTTTGTAACTGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 17866781 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TTTATCGTTGCATTTATTGCAGCACC 176231 ||||| || | | | || || | |||| ||||| | || || ||||| || || Sbjct 17866782 ATGATCCCTACTTTATTGACCGCAACTT-ATGTATTTATTATAGCCTTAATTGCTGCTCC 17866840 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 || | ||||| |||||||||| ||||| || | ||||||||||| |||||||| || Sbjct 17866841 TCCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAAATAA 17866900 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 || || | || || | | || | || || || || | || || ||||| || Sbjct 17866901 TATTATTTTTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 17866960 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||| ||| | ||||| |||||| | |||||||| | || || | || |||| Sbjct 17866961 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTAATTGT 17867020 Query 176412 ATTCCACTTCCTTATCGGTATCTC-------------AGCTT---ACATGGGACGCCAAT 176455 | |||||| | | ||| | | ||||| ||||||| || | | Sbjct 17867021 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCGTGAGT 17867080 Query 176456 GGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAG 176515 ||||||||| || | | || || |||||||||||||| |||||||| || | | | Sbjct 17867081 GGGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCAACTACTG 17867140 Query 176516 TATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATG 176575 | | ||||||| || |||||| | |||| ||| ||||||||||| ||| ||||||| Sbjct 17867141 TTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATG 17867200 Query 176576 GTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACA 176635 |||||||||| || || || ||||| |||||||| ||| |||||||||| || ||||||| Sbjct 17867201 GTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACA 17867260 Query 176636 ACATTCTAAT 176645 |||| || || Sbjct 17867261 ACATCCTTAT 17867270 >seq1107 Length=8226 Score = 158 bits (174), Expect = 1e-33 Identities = 206/283 (73%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || || |||||| | | |||||||| Sbjct 2531 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 2590 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || ||||| || ||||| || || || | ||||| ||||| Sbjct 2591 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 2650 Query 19415 CAATCTACCAGTGGTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTA 19470 |||| || || || |||||| ||| |||| | | | || ||||| | | Sbjct 2651 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAA--AGAAACGATTGC 2706 Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530 ||||| || || |||||| |||||||| || ||||||||||| |||||||| | Sbjct 2707 TTAATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTC 2766 Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 ||||||| ||| |||| ||||| |||||||||||| | || || Sbjct 2767 CAACAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 2809 >seq110 Length=4557 Score = 158 bits (174), Expect = 1e-33 Identities = 206/283 (73%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || || |||||| | | |||||||| Sbjct 4023 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 3964 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || ||||| || ||||| || || || | ||||| ||||| Sbjct 3963 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 3904 Query 19415 CAATCTACCAGTGGTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTA 19470 |||| || || || |||||| ||| |||| | | | || ||||| | | Sbjct 3903 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAA--AGAAACGATTGC 3848 Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530 ||||| || || |||||| |||||||| || ||||||||||| |||||||| | Sbjct 3847 TTAATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTC 3788 Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 ||||||| ||| |||| ||||| |||||||||||| | || || Sbjct 3787 CAACAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 3745 >seq81 Length=4664 Score = 158 bits (174), Expect = 1e-33 Identities = 206/283 (73%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || || |||||| | | |||||||| Sbjct 871 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 930 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || ||||| || ||||| || || || | ||||| ||||| Sbjct 931 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 990 Query 19415 CAATCTACCAGTGGTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTA 19470 |||| || || || |||||| ||| |||| | | | || ||||| | | Sbjct 991 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAA--AGAAACGATTGC 1046 Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530 ||||| || || |||||| |||||||| || ||||||||||| |||||||| | Sbjct 1047 TTAATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTC 1106 Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 ||||||| ||| |||| ||||| |||||||||||| | || || Sbjct 1107 CAACAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 1149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603483853935360