Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1165 91.5 1e-13 seq1 89.7 4e-13 >seq1165 Length=25613772 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || ||||| ||||| | || ||||| ||| || Sbjct 10928116 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 10928175 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || || || || || ||||| || || | || || | Sbjct 10928176 GACACGATCGATAAC--GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACC 10928233 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || |||||||| |||||||| |||| |||| |||| ||||||||| Sbjct 10928234 AGCAGAGGCTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCTTGGCCGATTACA 10928293 Query 27968 ACATCCAAAAAGAGAGCACTTTGCAT 27993 ||||||||||||| ||| |||||| Sbjct 10928294 ACATCCAAAAAGAATCCACCTTGCAT 10928319 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || ||||||||||| || || || || || || | || || || ||| Sbjct 10935894 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 10935953 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| ||||| || || ||||| || || ||||| Sbjct 10935954 TCCGAC-----ACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGC 10936008 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| || | || ||||| || || ||| | || |||| |||| ||| ||| Sbjct 10936009 CGGACCAGCAGCGTCTCATCTTTGCTGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCG 10936068 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCAT 27993 |||||||||| |||||||| |||||||||| Sbjct 10936069 ATTACAACATTCAAAAAGAATCCACTTTGCAT 10936100 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||| | || || || || || | || || || ||| || Sbjct 10317439 ATGCAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGAGAGCTCC 10317498 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| ||||| || || ||||| ||||| |||| ||| | Sbjct 10317499 GACACGATCGACAAC--GTCAAGGCTAAGATCCAGGACAAGGAAGGGATTCCACCGGACC 10317556 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||| | || || |||||||| || | || |||| |||| |||| | ||||||| Sbjct 10317557 AGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGATTACA 10317616 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| ||| | || | || | ||| | || |||||| Sbjct 10317617 ACATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGC 10317666 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || ||||| | || ||||| ||| Sbjct 12023928 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGC 12023987 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || |||| ||||| || || ||||| ||||| | || || Sbjct 12023988 TCCGACACCATCGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGG 12024045 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||||||||| | || |||| |||| |||| |||||| Sbjct 12024046 ACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATT 12024105 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| |||||||| || || | ||| |||| | ||| | ||||| ||| Sbjct 12024106 ACAATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGC 12024158 >seq1 Length=28940139 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || ||||| || ||| || | || || |||||| | Sbjct 20996261 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 20996320 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| ||||| || ||| ||||| || || | || || | Sbjct 20996321 GACACGATCGACAAT--GTCAAGGCCAAGATACAGGACAAGGAGGGCATCCCACCTGATC 20996378 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | || ||||||| |||||||| |||||| | || || | || | |||| | || ||| Sbjct 20996379 AACAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTG-CTGACTAC 20996437 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| || | |||||||| | ||| | ||||| ||| Sbjct 20996438 AACATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGC 20996488 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || ||||| || ||| || |||| || |||||| || Sbjct 20996033 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 20996092 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||||| || || ||||| | || || | Sbjct 20996093 GACACCATTGACAAT--GTCAAAGCCAAAATTCAGGATAAGGAAGGGATCCCACCAGACC 20996150 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 ||||| || | || |||||||| |||||| | || || | ||||| |||| | || ||| Sbjct 20996151 AGCAAAGGCTCATCTTTGCCGGTAAACAACTAGAGGATGGACGCACACTTG-CAGACTAC 20996209 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||| || || || | |||||||| Sbjct 20996210 AACATCCAGAAGGAATCAACCCTTCATTTGGT 20996241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355856336771946