Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq965 107 2e-18 seq1165 98.7 9e-16 seq1 96.9 3e-15 >seq965 Length=51047765 Score = 107 bits (118), Expect = 2e-18 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || ||||| || ||||| | ||||| |||| || Sbjct 46933582 CACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGCCCGTCTTC 46933523 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| || || || || |||||||||| ||||||| | | ||| |||||| Sbjct 46933522 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG-ATACCCTCCTTGTCCT 46933464 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| ||| |||| ||| | | | || ||| |||||||| |||| ||| || | Sbjct 46933463 GGATCTTCGCCTTGA-CGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTC 46933405 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || ||||| || ||||| |||||||| Sbjct 46933404 TTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 46933370 >seq1165 Length=25613772 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| ||||| | || |||||| || || || || ||||||||||| Sbjct 10317893 CCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCC 10317834 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| ||||| || || || || | ||||||||| | ||| Sbjct 10317833 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 10317774 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | || |||||| ||| ||| || | ||| | | | ||| ||| |||||| Sbjct 10317773 ATCCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTCCAC 10317715 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 10317714 CTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 10317667 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/220 (71%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||| ||| || || ||| || || || || ||||| ||||| || | | | Sbjct 10936339 CGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCCA 10936280 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || ||||| || || ||||| || || |||||||| || |||||| | || ||||| Sbjct 10936279 TCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGGATCCCT-TCTTT 10936221 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATC---GCTCGACTCCACGTCCACCG 39244 ||| |||||| |||| ||| | || | | || |||| || || |||| | Sbjct 10936220 ATCCTGGATTTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---TCGACTTCCAGAG 10936165 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| | ||||||||||| ||||| || ||||| ||||| Sbjct 10936164 TGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 10936125 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| || || |||||||| | || || |||| || || || || || ||||| Sbjct 10936087 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCAGCAAAG 10936028 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | | ||| |||||| ||| || |||| ||| Sbjct 10936027 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 10935969 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| |||||| || | ||||| | || || || || ||||| || Sbjct 10935968 GTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCAC 10935909 Query 39273 AAAGATTTGCATCTTTAC 39290 ||| || |||||||| || Sbjct 10935908 AAATATCTGCATCTTCAC 10935891 >seq1 Length=28940139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || ||||||||||| ||||| || | || ||| Sbjct 21029181 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCA 21029122 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| ||||| | |||||| || ||||| | || || |||||| Sbjct 21029121 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCT-TCCTTGTCCTG 21029063 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| | | | |||||| || || || | || || |||| Sbjct 21029062 GATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTT 21029003 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||| || || || || |||||||||||||||| Sbjct 21029002 TCCAGTGAGAGTCTTCACAAAGATTTGCATCT 21028971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429538281348374