Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1030 203 3e-47 seq1229 150 2e-31 >seq1030 Length=25649276 Score = 203 bits (224), Expect = 3e-47 Identities = 577/879 (66%), Gaps = 7/879 (1%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| ||||| |||| |||||| || |||||||| || |||| | ||| || Sbjct 1352407 TTTTGATATTCCCCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGAAGCGAGATCAGC 1352348 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||||| ||||| | | ||| | || | || || || | | | Sbjct 1352347 TCCATCCAATCAAAAGGATTCGCCACACCGTACAGCTTCCCGTACCCAAGCGCACCCAAC 1352288 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 |||| || || ||||| ||||| ||||| ||||| | ||| | || || || | || Sbjct 1352287 AATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCAAC 1352228 Query 4437 -CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || ||||| | || ||||||| ||||| || || || | | || Sbjct 1352227 GCGCAC-GGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAA 1352169 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 | || | | | || | | | || | || | | |||| | ||||| || Sbjct 1352168 CGCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGTACAACAGGCACGCGAA 1352109 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 ||| || || | ||| || |||| || | |||| ||||| || || |||||||| |||| Sbjct 1352108 ATCGCAGTGGAGACCCTCATCTC-GCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCA 1352050 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 |||| || | |||||| ||||||||||| ||| ||| ||| || ||||| || || | Sbjct 1352049 TTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCT 1351990 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATT 4734 | ||| |||||||| | ||||| | |||| | || | | | | ||||| | Sbjct 1351989 CCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGT-CT--CCGAGCCGTCGATCCAAT 1351933 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATT 4794 |||| ||||| | ||||| || ||||| |||| || | || |||| ||| | Sbjct 1351932 TTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGAC 1351873 Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 | ||||| | ||||| || ||||| |||| || || |||||||| || | Sbjct 1351872 GGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGT 1351813 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 | || || || || || || || || ||||| ||| | ||| || | || || || | Sbjct 1351812 GGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGGACCT 1351753 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | || ||| | | | ||| ||| || || ||||| |||||| || || | Sbjct 1351752 CCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGG 1351693 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 | | || || | | |||| || ||||||| | || | ||||||| | | || Sbjct 1351692 CGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGAT 1351633 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 ||| | | ||||||||| ||| ||||||||||||||||||| ||||| |||||||| Sbjct 1351632 CTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACATTT 1351573 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 |||||| | || ||||||||||| | ||| ||||| Sbjct 1351572 CCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATC 1351534 >seq1229 Length=21133251 Score = 150 bits (166), Expect = 2e-31 Identities = 587/912 (64%), Gaps = 13/912 (1%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||||||||| |||| ||| || |||||||| || || |||| | |||||| Sbjct 20051416 TTTTGGTATTCCCCGACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAAC 20051357 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||||||||||| || || ||| || | ||| || || | | | Sbjct 20051356 TCCATCCAATCAAACGGATTCGTCACGCCGTACACCTTCCCGCACCCGAGCGCGCCCAAC 20051297 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 || | || || ||||| ||||| ||||| ||||| | | | ||| || || | ||| Sbjct 20051296 AACCTATCTGCCACAAACTCTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAAT 20051237 Query 4437 -CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || ||||||| || ||||| ||||| || || || | | ||| Sbjct 20051236 GCGCAC-GGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTAT 20051178 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAA 4554 | | | || | | ||| || || || | | |||| || ||||| | Sbjct 20051177 CCCCATCACGCGCTCCTCGCTTAATTTGTTC-CTCAGCAAGCTGTACAACAAGCACGCGA 20051119 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 |||| || || | ||||| |||| || | || || ||||| || || |||| || ||| Sbjct 20051118 AATCGCAGTGGAGTCCTTCATCTC-GCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGC 20051060 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACCCAGAAAAGAATATGC 4671 ||||| || | |||||| | ||||||||| ||| | || || || |||| |||||| | Sbjct 20051059 ATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAA--GAATATCC 20051002 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 |||| ||| ||||||||||| | || | |||| | | | | | | |||| Sbjct 20051001 CTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATG---TCTCCGAGCCGTCGATCC 20050945 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 | |||| ||||| | || ||||| ||||||||| | || | | ||| ||||| Sbjct 20050944 AATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATA 20050885 Query 4792 ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 | || ||||| | || || || || || |||| || || |||||||| | Sbjct 20050884 AGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGG 20050825 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 | || || || || || || || || || ||||| ||| | || || | ||||| | Sbjct 20050824 AGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGA 20050765 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 |||| || || || | | | ||||||| || || || || ||| || || | Sbjct 20050764 CTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGA 20050705 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 | || | || || | || |||| | ||||| | | || || ||| ||| | | Sbjct 20050704 AGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGATTCCCACTGGCGGA 20050645 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 || | | | || || || || | |||||||| || ||||| ||||| ||||||| Sbjct 20050644 TGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACA 20050585 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAA 5151 | ||| || || || ||||| || |||| ||| |||| || ||| || || | Sbjct 20050584 TTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTTCGGGGTTA 20050525 Query 5152 GAAGCGGTTCTT 5163 | ||||| |||| Sbjct 20050524 GCAGCGGCTCTT 20050513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427042323875534