Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1030 141 1e-28 seq1229 116 5e-21 seq1103 91.5 2e-13 >seq1030 Length=25649276 Score = 141 bits (156), Expect = 1e-28 Identities = 390/595 (66%), Gaps = 2/595 (0%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || || ||||| ||||||| || || ||||| || ||||| | Sbjct 1352116 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 1352057 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||||| || || ||||||||||||||||| | ||| ||| | || || ||||| Sbjct 1352056 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCTGAGAAGAA 1351998 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 || || || ||| ||||| ||| | | |||||| || || | | | || || Sbjct 1351997 AATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTCGAT 1351938 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| | ||||| || ||||| || || || | || || || || | ||| Sbjct 1351937 CCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAA 1351878 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 |||| ||| ||||| | | ||||| | |||||| |||| | || |||||||| Sbjct 1351877 GAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTC 1351818 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 |||||| || || || || || || || || ||||| || | || || | || ||| Sbjct 1351817 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTG 1351758 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 |||||||| || | | | || | ||||| || || || || || || || Sbjct 1351757 GACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAA 1351698 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATT 48619 || || | || || | | || | || |||| | || || | ||||| Sbjct 1351697 GAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCG 1351638 Query 48620 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 || ||||| || | ||| ||||| ||||| |||||||| || || || ||||| || || Sbjct 1351637 GAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTA 1351578 Query 48680 CATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 ||| | ||| || | ||| || || ||||| || ||||| || |||||| Sbjct 1351577 CATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATTT 1351523 Score = 114 bits (126), Expect = 2e-20 Identities = 112/142 (79%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||| | ||| ||||||||||| || |||||| ||| || | | || Sbjct 17554602 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 17554661 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| |||||| || || || || | ||| |||||||| | | ||| | ||||| Sbjct 17554662 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGATACCCTCATCA 17554720 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 ||||||||||||||||||| || Sbjct 17554721 ACATATGCTGAGGTCTTTCTAC 17554742 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||||||||| | ||| | ||| || | |||| | || | || |||||| | ||| || Sbjct 17554272 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 17554331 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| || ||||||||| ||||||||||||| |||| ||||| || || || Sbjct 17554332 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 17554391 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || ||||| || || || | ||| || ||||| || || ||||| Sbjct 17554392 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 17554451 Query 78338 ACCCTCTATACTGTCATCCATCAT 78361 || || ||||| ||||| |||| Sbjct 17554452 TCCTTCAATACTATCATCTTTCAT 17554475 >seq1229 Length=21133251 Score = 116 bits (128), Expect = 5e-21 Identities = 375/580 (65%), Gaps = 4/580 (1%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || ||||| || || || |||||||||| |||| ||||| || || || Sbjct 20051128 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 20051069 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||||| || || ||||| | ||||||||| || |||| || || ||| Sbjct 20051068 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 20051009 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 ||||| ||||| ||| ||||| || | |||||||| || | || || || || Sbjct 20051008 AATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAA--TGTCTCCGAGCCGT 20050951 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| | | |||||||| ||||| || || || |||| ||||| | || Sbjct 20050950 CGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGC 20050891 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||| | | | ||||| | | | ||| | ||| || |||| | || |||| Sbjct 20050890 GAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACA 20050831 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 |||||||||| || || || || || || || || ||||| || | ||| || | || Sbjct 20050830 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGA 20050771 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || || || | || | | || | || || || |||||||| || | Sbjct 20050770 CTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGG 20050711 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 | || || || | || || | || || | ||| |||| || || || | ||| | Sbjct 20050710 CGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGATTCCCACT 20050651 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 ||| || | || | || || || || || ||||||||||| || || ||||| | Sbjct 20050650 GGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCT 20050591 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 | ||||| | ||| || || ||| |||||||| || || Sbjct 20050590 TGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 20050551 Score = 114 bits (126), Expect = 2e-20 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | ||| ||||||||||| ||||||||| || ||| | | || | Sbjct 17548572 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 17548631 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||||| || || ||||| | ||| ||||| || || || || | |||||| Sbjct 17548632 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 17548690 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 78576 |||||| || |||||||| | | ||| | || | ||||| | ||| || | |||| Sbjct 17548691 CATATGTTGGGGTCTTTCTA-CAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 17548749 Query 78577 AAGTTTTAAAACCAAAATA 78595 ||||| || |||||||| Sbjct 17548750 GGGTTTTGAAGCCAAAATA 17548768 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | |||| | || | || |||||| | ||| || Sbjct 17548207 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 17548266 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| |||||||||||| |||| ||||| || || || Sbjct 17548267 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 17548326 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || || | ||| || ||||| ||||| || || Sbjct 17548327 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 17548386 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 17548387 CCTTCAATACTATCATCTTTCATG 17548410 >seq1103 Length=43299053 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| |||||| || | ||| | | ||||||||| |||||| |||| |||| || Sbjct 38889019 CTCTTCTTCATACTGGGAATACAAGTGCTCAAATTCAATTCCCCAGGAATCAGCCAAACC 38888960 Query 77957 AGG-GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 || |||| || | ||||| | ||| ||||| | ||||| || | |||| || ||||| Sbjct 38888959 AGAAGCAT-CACTAGGGCAAAACAAGGACCATTTTCCATCATCTCTGACTCTTTCCATAA 38888901 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||||| | ||| |||||| ||| ||||| || Sbjct 38888900 AGAGATCAGGAACCCAGAGAGCATAAAAGAGATCACG 38888864 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||||| || |||| |||| | ||| | ||| || | ||| || Sbjct 38888367 CCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 38888308 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || | ||||||||||||| || ||||| || || || |||||| |||||| Sbjct 38888307 TTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGAG 38888248 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| ||||| || || Sbjct 38888247 AGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATG 38888188 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || |||||||| ||||| | |||||| |||||| Sbjct 38888187 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 38888146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694656660662720