Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1030 134 2e-26 seq1229 129 8e-25 seq1103 107 3e-18 >seq1030 Length=25649276 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 17554272 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 17554331 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| || ||||||||| ||||||||||||| ||||||||| || || || Sbjct 17554332 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 17554391 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 17554392 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 17554451 Query 76933 GCCCTCTATACTATCATCCATCAT 76956 || || ||||||||||| |||| Sbjct 17554452 TCCTTCAATACTATCATCTTTCAT 17554475 Score = 120 bits (132), Expect = 4e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | ||||||||||||||| ||||||||| ||| || | | || Sbjct 17554602 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 17554661 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| |||| | | || ||||| | ||| |||||||| | || || | ||||| Sbjct 17554662 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGATACCCTCATCA 17554720 Query 77112 ACATATGCTGAGGTCGTTCTACA 77134 ||||||||||||||| ||||||| Sbjct 17554721 ACATATGCTGAGGTCTTTCTACA 17554743 >seq1229 Length=21133251 Score = 129 bits (142), Expect = 8e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 17548207 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 17548266 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| |||||||||||| ||||||||| || || || Sbjct 17548267 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 17548326 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 17548327 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 17548386 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 17548387 CCTTCAATACTATCATCTTTCATG 17548410 Score = 105 bits (116), Expect = 1e-17 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | ||| ||||||||||| || |||||| || ||| | | || | Sbjct 17548572 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 17548631 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||| | | || || || | ||| ||||| || ||||| || | |||||| Sbjct 17548632 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 17548690 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171 |||||| || |||| ||||||| ||| | || | ||||| | ||| || | |||| Sbjct 17548691 CATATGTTGGGGTCTTTCTACA-ACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 17548749 Query 77172 AAGTTTTAAAACCAAAATA 77190 ||||| || |||||||| Sbjct 17548750 GGGTTTTGAAGCCAAAATA 17548768 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/117 (78%), Gaps = 6/117 (5%) Strand=Plus/Plus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA- 76146 || |||| |||||| || |||||||||||||||||||| |||||||||| | ||| || Sbjct 17546813 ATGAATGTATCTGCAAGACCCTGAACTCCAATACCAATGGGTCTATGTCGCAAATTTGAC 17546872 Query 76147 --AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 || ||| ||| || |||||| ||||||| ||| || ||||| || |||||| Sbjct 17546873 CTTCTTGCAGTTTC---AACAGGGTAGTAATTAACATCGATTATTTTGTTAAGATTT 17546926 >seq1103 Length=43299053 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||||| ||||||| |||| | ||| | ||| || | |||||| Sbjct 38888367 CCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 38888308 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || | |||||||||||| || ||||| || | ||||| |||||| ||| || Sbjct 38888307 TTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGAG 38888248 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 || || |||||||| || ||| || | |||||| |||| || ||||| ||| Sbjct 38888247 AGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATG 38888188 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || || ||||| ||||| | |||||| |||||| Sbjct 38888187 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 38888146 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| |||||| || | ||| || | ||||||||| |||||| |||| ||||||| Sbjct 38889019 CTCTTCTTCATACTGGGAATACAAGTGCTCAAATTCAATTCCCCAGGAATCAGCCAAACC 38888960 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || | ||| | || || | ||| ||||| | ||||| || | || | || |||||| Sbjct 38888959 AGAAGCATCACTAGGGCAAAACAAGGACCATTTTCCATCATCTCTGACTCTTTCCATAAA 38888900 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| |||||| ||| ||||| || | | || |||||| Sbjct 38888899 GAGATCAGGAACCCAGAGAGCATAAAAGAGATCACGAGCCCGACATTCTTC 38888849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712921941471360