Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 105 1e-17 seq9 104 5e-17 seq7 104 5e-17 seq6 104 5e-17 seq5 104 5e-17 seq3 104 5e-17 seq2 104 5e-17 >seq1 Length=32082701 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 12134074 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12134015 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 12134014 CCCCACGGTGGGC 12134002 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAACTTATGG 230473 ||||||| | || ||||| | || || ||| || ||| ||||||| | | ||| Sbjct 31016763 GGAGTTCGTGTGCGACGCGCTGCCGTG-CGCATTGGTGGGGATGAACGGGGCGTTGATGA 31016821 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 | |||||||| || || || || || | | || | ||| || || | || ||| |||| Sbjct 31016822 GTCAGTACATAGAGTTTGTGGCAGATAGGTTGTTGGGTGCGCTCGGGTGCGGGAAGGTGT 31016881 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 || | | ||| || |||| | |||||| | |||||||| ||||||||||| || | Sbjct 31016882 ACGGCGTGACGAATCCGTTTGATTGGATGGAGTTGATTTCGCTGCAAGGGAAGACGAATT 31016941 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||| || ||| | ||| | || || || | | || ||||||| Sbjct 31016942 TCTTTGAGAAGAGAGTCGGGGAATACCAAAAGGCTTCTGTGATG 31016985 >seq9 Length=40397281 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 9089459 CTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 9089518 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 9089519 AGCCCCACGGTGGGC 9089533 >seq7 Length=22269817 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 6556837 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6556896 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6556897 CCCACGGTGGGC 6556908 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 18805092 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18805033 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18805032 CCCACGGTGGGC 18805021 >seq6 Length=23636167 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7315214 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7315273 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7315274 CCCACGGTGGGC 7315285 >seq5 Length=49531769 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 6602323 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6602264 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6602263 CCCACGGTGGGC 6602252 >seq3 Length=30666748 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 23757900 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 23757841 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23757840 CCCACGGTGGGC 23757829 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 26448315 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 26448374 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 26448375 CCCACGGTGGGC 26448386 >seq2 Length=53008150 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 8883747 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8883688 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8883687 CCCACGGTGGGC 8883676 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 10496517 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10496576 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10496577 CCCACGGTGGGC 10496588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057803615731520