Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7 154 2e-32 seq1 116 4e-21 >seq7 Length=22269817 Score = 154 bits (170), Expect = 2e-32 Identities = 564/873 (65%), Gaps = 19/873 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| | ||||| || || ||||| || || | || || || || Sbjct 8164865 TTTGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCT 8164924 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||||||||| | | | || |||||| || | | | | Sbjct 8164925 CCATCCAATCAAAAGGATTCCCCACACCGTACAGCTTCCCGTACCCAAGCGCACCCAACA 8164984 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||||| ||||| ||||| || || | ||| ||||| | ||||| || | | || Sbjct 8164985 ATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCA-AC 8165043 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAA-TAAT 16911 | | ||| || || || || ||| | |||||| | ||||| ||||| | ||| Sbjct 8165044 GCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAAC 8165103 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTA----TGTTTAAGATGTTTAAACATCAGACATG 16967 | || ||| |||||| | | | ||| ||| ||| ||| || | Sbjct 8165104 GCCTTCA-CTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAGGCACG 8165158 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 |||||||||| || | ||||| |||| ||| | ||||| || ||||| || || | Sbjct 8165159 CGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAATCCCG 8165218 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| || || || || | ||||||||||||| || ||| || ||||| || | Sbjct 8165219 GCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCC 8165278 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 |||| ||| | |||||||||||||||| || ||| | ||| | || || |||| Sbjct 8165279 CCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGT--CG-ATCC 8165335 Query 17148 ATTTCTGCACCCACTCGGCTT--TTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 | || | ||||| ||||| ||||| | ||| | ||| || ||||| | ||| Sbjct 8165336 AATTTAACGCCCACGTGGCTTTCTTTGC--GACGCAGGGAACCGTCTCGATGGCGTGAAA 8165393 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 | | ||||| | ||| | || || || || | || || ||||||||| Sbjct 8165394 GAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTC 8165453 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTG 17325 |||||| |||||||| ||||| || || || ||||| ||| || || || || | || Sbjct 8165454 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTG 8165513 Query 17326 AACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAA 17385 || ||| ||| | | | || || || ||| |||||||||||| || ||||| Sbjct 8165514 GACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAA 8165573 Query 17386 AAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445 || || | | ||| | | ||| | || ||||| | || || | ||||| Sbjct 8165574 GAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCG 8165633 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 | ||||| || | ||| ||||| || | ||||||||| || | || || || || Sbjct 8165634 GAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 8165693 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||| | |||||| | ||| || || ||||| Sbjct 8165694 CATTTCCCAAATTTGTGGGTACTGAATCGGGAA 8165726 >seq1 Length=32082701 Score = 116 bits (128), Expect = 4e-21 Identities = 309/467 (66%), Gaps = 5/467 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||||||||| || | ||| || |||| ||| || ||||| || | Sbjct 31016689 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 31016630 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | || ||||| || || || || ||||||||||||||| ||| || | Sbjct 31016629 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCG 31016570 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | |||||||| || || ||| | |||||||| || | || || ||| | ||| | Sbjct 31016569 AGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 31016510 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||| || | |||| ||||| |||| | ||| || ||||| | Sbjct 31016509 CGT--CG-ATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACAGTTTCAA 31016453 Query 17196 TGGCCTTAAATAA-TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||| |||||| ||| ||||| | || |||| ||||| || | || || Sbjct 31016452 AGGCGCGAAATAAGCGGCTC-TTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 31016394 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||||||||||||| |||||||| ||||| || || || ||||| ||| || || Sbjct 31016393 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 31016334 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | ||| | ||| ||| | | || || |||||| ||||| || || Sbjct 31016333 TCGGAGACTTGGATTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 31016274 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 |||||||| || || | | ||| | ||||| | ||| ||||| Sbjct 31016273 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTC 31016227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517535870142720