Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq1504 446 3e-121 >seq1504 Length=2444 Score = 446 bits (494), Expect = 3e-121 Identities = 910/1317 (69%), Gaps = 70/1317 (5%) Strand=Plus/Minus Query 14216 GAAATAAATGACGGTACGCGTGTTATTTCCACGGTCGCAACCGCAATCGTCGGCATGGTC 14275 ||| | || ||||| || || ||| | ||||| || || || || |||||||| Sbjct 2358 GAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGCACGGCGATTGTGGGCATGGTG 2299 Query 14276 TGGACAGCCAGCGATGCGGATGCCGAGACATTTCCCCTCAACGAGCC-GGTACTGATTAC 14334 || || | | ||||| |||||| | || || ||||| |||| ||||||| |||| Sbjct 2298 TGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCAATAAGCCTGGTACTGCTTAC 2239 Query 14335 CAATGTGCAGAGCGCCATTGCGAAAGCCGGTAAAAAAGGCACTCTGTCAGCTTCCCTGCA 14394 | |||| | || ||||| | ||||| || | || || ||| | || ||| | Sbjct 2238 CGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGTACGCTGGCCCGCTCACTGGA 2179 Query 14395 GGCCATCGCCGACCAGTCAAAG-CCTGTCACCGTTGTCGTGCGCGTTGCCGAAGGTACCG 14453 || ||||| |||||| |||| || |||||||| || |||||||||||| | || Sbjct 2178 CGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGTGCGCGTTGCCCAGGG----- 2124 Query 14454 GAGACGATGCAGAAGCGCAGACCACGTCCAACATTATCGGCGGCACGGATGAGAACGGTA 14513 ||| | |||||| | ||||| || || |||||||||||| | || |||||| Sbjct 2123 ----CGAAACCGAAGCGGAAACCACCTCAAATATTATCGGCGGCGTGACTGCCGACGGTA 2068 Query 14514 AATACACCGGTATCAAGGCGCTGCTAACTGCCGAAGCGGTCACCGGCGTTAAGCCGCGCA 14573 | | ||||| || |||||||| || | || | || | | ||||| || ||||||| Sbjct 2067 AGAAAACCGGCATGAAGGCGCTACTTTCCGC-GCAGTCGCAGCTGGCGTGAAACCGCGCA 2009 Query 14574 TTCT-CGGTGTGCCGGGTCTCGATACGCAGGAAGTCGCAACCGCACTTGCATCGGTCTGT 14632 |||| ||| |||||||| | |||||||||| || | || | || | || | Sbjct 2008 TTCTTCGGCGTGCCGGGGCATGATACGCAGGCCGTATCCACTGAGCTGTGAGCGTGGCGC 1949 Query 14633 ATCAGCCTGCGTGCGTTTG-GT-TACGTCAGCGCATGGGGCTGTAAGACCATTTCCGAGG 14690 | |||||||| || |||| || || |||||| | || |||||| ||| | | | Sbjct 1948 AG-AGCCTGCGGGCCTTTGCGTATATGTCAGCTTACGG--CTGTAAAACCGTGGCAAGAG 1892 Query 14691 CGATGGCATATCGCGAGAATTTCAGCCAGCGCGAGCTGATGGTCATCTGGCCTGATTTCC 14750 |||| | || ||||| || ||||||||||| || ||| | ||||||||||| ||| Sbjct 1891 CGATCACTTACCGCGACAACTTCAGCCAGCGTGAAGGAATGATTATCTGGCCTGACTTCA 1832 Query 14751 TCGCATGGGATAC----CACC--GCGAACGCCACCGNNNNNNNNNNNNNNNNNNNNNNNG 14804 | | || || | | ||| | || |||| | Sbjct 1831 TAAACTTTGACACGGTGCTGCAGGCGGATGCGACCGCTACGCTACGCCCGC--------G 1780 Query 14805 CACTCGGTCTGCGTGCCTACA-TCGACCAGACTATCGGCTGGCACAAAACGCTGTCTAAC 14863 | || || ||||| || | | ||||| || | ||||||||||||||| ||||||||| Sbjct 1779 CCCTTGG-CTGCGCGCTAAAAATCGACGAGCAAACCGGCTGGCACAAAACCCTGTCTAAC 1721 Query 14864 GTTGGCGTGCAGGGCGTTACCGGCAT--CAGCGCCTCAGTCTTTTGGGATTTGCAGGCAT 14921 || ||||| | ||||| |||||| | | ||| | || || |||||| |||||| | Sbjct 1720 GT-GGCGTCAACGGCGTAACCGGCTTGTCTGCGGAT--GTGTTCTGGGATCTGCAGG-AC 1665 Query 14922 CCGGCA-CAGATGCTGACCTGCTCAACGAGGCCGGAGTCACCACGCTGGTGCGCAAGGAT 14980 |||||| | ||||| | ||||| ||| || || |||||||| || | | |||||| Sbjct 1664 CCGGCAACTGATGCCGGACTGCTGAACCAGAACGACGTCACCACCTTGATCAGGAAGGAT 1605 Query 14981 GGTTTCCGTTTTTGGGGGAACCGCA-CATGCTCTGATGAC-CCGCTTTTCCTGTTTGAGA 15038 |||||||| || ||||| |||| | || |||||| ||||| |||| |||||| | Sbjct 1604 GGTTTCCGCTTCTGGGGTTCCCGCTGCCTGAG-TGATGAATCCGCTGTTCCAGTTTGAAA 1546 Query 15039 ACTACACCCGAACCGCGCAGGTGCTGGCCGACACAATGGCTGAGGCGCACATGTGGGCGG 15098 |||||||||| ||||||||||| ||||| ||||| ||||| |||| || |||||||||| Sbjct 1545 ACTACACCCGCACCGCGCAGGTACTGGCTGACACCATGGCAGAGGGCCATATGTGGGCGG 1486 Query 15099 TCGATAAGCCCATCACCGCATCGCTCATCCGTGACATTGTCGACGGCATTAACGCCAAAT 15158 | |||| ||| | | | | ||||| ||| || ||| |||| || || ||||||| Sbjct 1485 TGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATATTATCGAAGGTATCCGCGCCAAAA 1426 Query 15159 TCCGCGAGCT-GAAATCAAATGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAA 15217 | ||| || | |||| | |||||| || | | |||||| |||||| | || || | Sbjct 1425 TGCGCAGCCTGGTAATC--AGGGCTACCTCATCGGCGGTGATTGCTGGATTGATGA--CA 1370 Query 15218 TCG--AACGATAAGGA-AACCCTCAAGGCCGGGAAACTGTATATCGACTACGACTATACA 15274 || ||||| || || | |||| || ||||||||||| | ||||||||||||||||| Sbjct 1369 GCGTTAACGACAAAGACAGCCCTGAAAGCCGGGAAACTCTGGATCGACTACGACTATACG 1310 Query 15275 CCGGTTCCCCCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGATAAATATCTGGTG 15334 || || || || ||||||| ||||| ||||||||||| ||||| || || |||||| Sbjct 1309 CCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCGCATCACTGACCGTTACCTGGTG 1250 Query 15335 AATCTGGCTGAATCG-GTCAACAGCTAAGGAGCCTGAAACAACATGGCACTACCCCGCAA 15393 || | | | || || | | ||||| | || |||||| |||| ||||| Sbjct 1249 GATTTCAC-CACCCGCGTAAGCGCATAAGGGG---GA---CCCATGGCCTTACCACGCAA 1197 Query 15394 A-CTTAAATATCTGAACAT-GTTCAATGACGGCCTTAGCTAC--ATGGGCGTTGTTGAAT 15449 | || ||| | |||||||| ||||| | ||| || | || |||||| ||| ||||| Sbjct 1196 AGCTAAAACACCTGAACATCTTTCAACGCCGG---TAAC-ACTGATGGGCATTGCTGAAT 1141 Query 15450 CCGTGACGCTGCCGAAGCTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGG-TATG 15505 |||| || |||||||| | |||||||||| || ||||||||||| ||||| |||| Sbjct 1140 CCGTCACCCTGCCGAAATTTTCCCGCAAGCTTGAGAACTATCGCGG-GGCGGCTATG 1085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97873451948928