Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7 154 2e-32 seq1 129 7e-25 seq6 87.8 2e-12 >seq7 Length=22269817 Score = 154 bits (170), Expect = 2e-32 Identities = 400/606 (66%), Gaps = 8/606 (1%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| || || |||||||||||||| |||||||| |||| | || || ||||| || | Sbjct 8165147 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGA 8165206 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 | || | ||| ||||||| || |||||||| ||||||||||| | |||||| | || Sbjct 8165207 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 8165265 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA---CCGGCG 24302 || |||||||| || || || ||||| || || | ||| || | || | | | Sbjct 8165266 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 8165325 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| ||||| ||| ||||| ||| |||||| || || || | ||||| Sbjct 8165326 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 8165382 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || || | ||||||| ||| ||||| | ||||| | || || || | | || Sbjct 8165383 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 8165442 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 |||||||| || || ||||| || ||||| ||||| || |||||||| | ||| Sbjct 8165443 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 8165502 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 |||| | ||| || || | || | | | || | || || || || ||||| Sbjct 8165503 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 8165562 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 |||||| || || || | || || | | || | || ||||| | ||||| Sbjct 8165563 GAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 8165622 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 8165623 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 8165682 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 24722 || || || ||||| | ||| || | | || ||||| || || || ||||| || Sbjct 8165683 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCG 8165742 Query 24723 GGATTT 24728 |||||| Sbjct 8165743 GGATTT 8165748 >seq1 Length=32082701 Score = 129 bits (142), Expect = 7e-25 Identities = 384/587 (65%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 31016689 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 31016630 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | || || || ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 31016629 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCC 31016571 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAAC-CGGCG 24302 || ||||| || ||||| || ||||| || || ||||| || | || | | | | Sbjct 31016570 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 31016511 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| ||||| ||| | |||||||||||||| || || || |||| || || Sbjct 31016510 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACAGTTTCA 31016454 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 | || ||| | | | ||||| | | ||| | || || || | | || Sbjct 31016453 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 31016394 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 |||||||| || || ||||| || ||||| ||||| || |||||||| | ||| Sbjct 31016393 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 31016334 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 |||| | || | |||| | || | | || | ||||| || ||||| || Sbjct 31016333 TCGGAGACTTGGATTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 31016274 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 31016273 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGAT 31016214 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 31016213 TCCCACTGGCGGATGTCCTGCGACAGGTCAACCTCCTCCGCCGTCCAAAATGAAGCTTCG 31016154 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || || || ||||| | |||||| || | || || |||||||| || Sbjct 31016153 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 31016107 >seq6 Length=23636167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 11061181 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 11061122 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||||| || || || || ||||| |||||| | |||||||| || || ||| Sbjct 11061121 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 11061062 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 11061061 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 11061002 Query 54365 CCCTCTATACTATCATCCATCAT 54387 || || ||||||||||| |||| Sbjct 11061001 CCTTCAATACTATCATCTTTCAT 11060979 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 11060852 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11060793 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | ||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 11060792 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 11060734 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTT 54570 |||| |||||||||||||| || | ||| Sbjct 11060733 ACATATGCTGAGGTCTTTCTACAACCTT 11060706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593710438033920