Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq1504 379 4e-101 >seq1504 Length=2444 Score = 379 bits (420), Expect = 4e-101 Identities = 905/1329 (68%), Gaps = 58/1329 (4%) Strand=Plus/Minus Query 17667 CACGGCGTGCAGGTGCTGGAGA--TTAACGAGGGCACCCGCGTCATTTCCACCGTATCCA 17724 |||||||||| | || || ||| ||||||| ||||||||| || | || || || Sbjct 2377 CACGGCGTGC-GCTGTTGTAGAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGCA 2319 Query 17725 CGGCCATTGTCGGCATGGTCTGCACGGCCAGCGATGCAGATGCGGAAACCTTCCCCCTCA 17784 |||| ||||| |||||||| ||||| | | ||||| ||||| | ||||| |||| Sbjct 2318 CGGCGATTGTGGGCATGGTGTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCA 2259 Query 17785 ATAAACCTG-TGCTGATTACCAATGTGCAGAGCGCAATTTCAAAGGCCGGTAAAAAAGGC 17843 |||| |||| | ||| ||||| |||| | || ||| | || || || | || Sbjct 2258 ATAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGT 2199 Query 17844 ACGCTGGCGGCATCGTTGCAGGCCATCGCTGACCAGTCAAAA-CCGGTCACCGTTGTCAT 17902 |||||||| || || | || ||||| |||||| ||||| || |||||||| || | Sbjct 2198 ACGCTGGCCCGCTCACTGGACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGT 2139 Query 17903 GCGCGTGGAAGACGGCACCGGTGATGACGAGGAAACGAAACTCGCGCAGACCGTTTCCAA 17962 |||||| | | ||| ||||| || ||| | ||| || || Sbjct 2138 GCGCGTTGCCCAGGGC---------------GAAACCGAA---GCGGAAACCACCTCAAA 2097 Query 17963 TATCATCGGCACCACCGATGAAAACGGTCAGTACACCGGACTAAAAGCCATGCTGGCGGC 18022 ||| |||||| | || ||||| || | ||||| | || || | || | || Sbjct 2096 TATTATCGGCGGCGTGACTGCCGACGGTAAGAAAACCGGCATGAAGGCGCTACTTTCCGC 2037 Query 18023 GGAGTCGGTAACCGGTGTTAAACCGCGTATTCT-CGGCGTGCCGGGACTGGATACCAAAG 18081 | ||||| | | || || |||||||| ||||| |||||||||||| | ||||| | | Sbjct 2036 GCAGTCGC-AGCTGGCGTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGCAGG 1978 Query 18082 AGGTGGCTGTTGCACTGGCATCAGTCTGTCAGAAGCTGCGTGCTTTCGGGTATATCAGCG 18141 || | || ||| | | || |||| ||||| || || | |||||| | Sbjct 1977 CCGTATCCACTGAGCTGTGAGC-GTGGCGCAGAGCCTGCGGGCCTTTGCGTATATGTCAG 1919 Query 18142 CATGGGGCTGTAAAACCATTTCCGAGGTGAAAGCCTATCGTCAGAATTTCAGCCAGCGTG 18201 | | |||||||||||| | | | || | || || | || ||||||||||||| Sbjct 1918 CTTACGGCTGTAAAACCGTGGCAAGAGCGATCACTTACCGCGACAACTTCAGCCAGCGTG 1859 Query 18202 AGCTGATGGTCATCTGGCCGGATTTCCTCGCATGGGATACGGT-CACCAGTACCACCGCC 18260 | ||| | |||||||| || ||| | | || ||||| | ||| | || Sbjct 1858 AAGGAATGATTATCTGGCCTGACTTCATAAACTTTGACACGGTGCTGCAGGCGGAT-GCG 1800 Query 18261 ACCGCGTATGCCACCGCCCGTGCGCTGGGGCTGCGCGCTAAAA-TCGACCAGGAGCAGGG 18319 ||||| || || || ||||| || || || ||||||||||||| ||||| || | || Sbjct 1799 ACCGC-TACGCTAC-GCCCGCGCCCTTGG-CTGCGCGCTAAAAATCGACGAGCAAACCGG 1743 Query 18320 CTGGCATAAAACGCTGTCCAATGTCGGGGTGAACGGTGTTACCGGCAT--CAGCGCATCT 18377 |||||| ||||| ||||| || || || || ||||| || |||||| | | ||| || | Sbjct 1742 CTGGCACAAAACCCTGTCTAACGT-GGCGTCAACGGCGTAACCGGCTTGTCTGCGGATGT 1684 Query 18378 GTATTCTGGGATTTGCAGGAGTCCGGCACC-GATGCTGACCTGCTTAACGAGTCAGGCGT 18436 || |||||||| ||||||| |||||| | ||||| | ||||| ||| || | ||| Sbjct 1683 GT--TCTGGGATCTGCAGGAC-CCGGCAACTGATGCCGGACTGCTGAACCAGAACGACGT 1627 Query 18437 CACTACGCTGATTCGCCGCGACGGTTTCCGCTTCTGGGGTAACCG-TACCTGCTCTGATG 18495 ||| || |||| | || |||||||||||||||||| ||| | |||| ||||| Sbjct 1626 CACCACCTTGATCAGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTGAG-TGATG 1568 Query 18496 AC-CCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTCGTGGCCGACACGATG 18554 | |||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||| Sbjct 1567 AATCCGCTGTTCCAGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCATG 1508 Query 18555 GCTGAGGCGCACATGTGGGCGGTGGACAAGCCCATCACTGCAACGCTGATTCGCGACATC 18614 || |||| || |||||||||||||| | ||| | | | ||||| ||||| || Sbjct 1507 GCAGAGGGCCATATGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATATT 1448 Query 18615 GTTGACGGCATCAATGCCAAATTCCGTGAGCTGAAAACAAACGGCTATATCGT-GGATGC 18673 | || || ||| |||||| | || ||| || | ||||| || | || | Sbjct 1447 ATCGAAGGTATCCGCGCCAAAATGCGCAGCCTGGTAA-TCAGGGCTACCTCATCGGCGGT 1389 Query 18674 GACCTGCTGG-TTCAGCGAAGAATCCAACGATGCGGA-AACCCTCAAGGCCGGAAAACTG 18731 || |||||| || | || | ||||| || | |||| || ||||| ||||| Sbjct 1388 GA-TTGCTGGATTGATGACAGCGT-TAACGACAAAGACAGCCCTGAAAGCCGGGAAACTC 1331 Query 18732 TATATCGACTACGACTATACACCGGTGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGT 18791 | ||||||||||||||||| || ||||| || || |||||||||| ||||||||||| Sbjct 1330 TGGATCGACTACGACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCGC 1271 Query 18792 ATTACCGATAAATACCTGGCAAATCTGGTCACCTCGGTTAACAGCAATTAAGGAGCCTGA 18851 || || || ||||||| || | |||| || ||| ||| ||||| | || Sbjct 1270 ATCACTGACCGTTACCTGGTGGATTTCACCACC-CGCGTAAGCGCA--TAAGGGG---GA 1217 Query 18852 CCGATGGCAATGCCGCGCAAA-CTCAAGTTAATGAACGTCTTTCTGAACGGCTACAGCTA 18910 || ||||| | || |||||| || || ||||| |||||| |||| | | | Sbjct 1216 CCCATGGCCTTACCACGCAAAGCTAAAACACCTGAACATCTTTC--AACGCCGGTAACAC 1159 Query 18911 TCA-GGGCGTTGCAAAGTCCGTCACGCTGCCAAAACTGACCCGTAAGCTCGAAAACTATC 18969 | | |||| |||| | |||||||| ||||| ||| | |||| ||||| || ||||||| Sbjct 1158 TGATGGGCATTGCTGAATCCGTCACCCTGCCGAAATTTTCCCGCAAGCTTGAGAACTATC 1099 Query 18970 GCGGTGCGG 18978 |||| |||| Sbjct 1098 GCGGGGCGG 1090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107374082264640