Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2 118 2e-21 seq6 105 1e-17 >seq2 Length=53008150 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || ||||| ||||| || ||| | ||| | ||| | Sbjct 27087668 ATGCAGATTTTTGTGAAAACCCTGACAGGAAAAACAATCACTCTTGAGGTAGAAAGCTCT 27087609 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||||||||| || || ||||| ||||| ||||| Sbjct 27087608 GACACCGTTGACAATGTGAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 27087549 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 27087548 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 27087489 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || |||||| | || | || |||||||| Sbjct 27087488 ATCCAGAAAGAATCCACTCTCCACTTGGTTCTTCGCCTCCGTGGTGGTAT 27087439 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || || ||||| || | ||| | ||| Sbjct 27084727 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 27084668 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||||| || || ||||| || ||||| || || Sbjct 27084667 GACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAG 27084608 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||| || |||||| | |||||| | || || | | || ||||| Sbjct 27084607 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 27084548 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | || |||| | ||| || ||||||| || Sbjct 27084547 ATTCAGAAGGAGTCCACACTCCACCTGGTCCTCCGTCTAAGAGGTGGAAT 27084498 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||| || ||| | ||| ||||| | Sbjct 27127306 ATGCAGATCTTTGTGAAAACGCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCT 27127247 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| ||||||||||| || || ||||| ||||| ||||| Sbjct 27127246 GACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 27127187 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 27127186 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 27127127 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || |||||| | || | || |||||||| Sbjct 27127126 ATCCAGAAAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTAT 27127077 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||||||| | ||| ||||| | Sbjct 27127534 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 27127475 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || || || || |||||||||||| Sbjct 27127474 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATCAA 27127415 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || |||||| | || ||| |||| || | | || || || Sbjct 27127414 CAGAGGTTAATCTTTGCCGGCAAACAACTCGAAGATGGTCGTACTCTTGCTGACTACAAC 27127355 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | |||||||| | ||| | || |||||||| Sbjct 27127354 ATCCAGAAGGAGTCAACCCTTCATTTGGTGCTTCGTCTCCGTGGTGGTAT 27127305 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| || ||| | ||| | || Sbjct 27083587 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 27083528 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | || || || |||||||| || || || ||||| || || Sbjct 27083527 GACACGATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 27083468 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | || ||| | | || | | |||||| || Sbjct 27083467 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAAC 27083408 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||| || ||||| || ||||||||||| || Sbjct 27083407 ATTCAGAAGGAATCCACATTGCATTTGGTGTT 27083376 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||||||| | ||| ||||| | Sbjct 27084271 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 27084212 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || || || || |||||||||||| Sbjct 27084211 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATCAA 27084152 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || |||||||| ||||| || |||| ||| | || || | | || || || Sbjct 27084151 CAGAGACTGATTTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 27084092 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | || ||||| | || | || |||||||| Sbjct 27084091 ATTCAGAAGGAATCTACCCTTCACTTGGTGCTTCGCCTTCGTGGTGGTAT 27084042 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||||||| | ||| ||||| | Sbjct 27087896 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAAACTATAACTTTGGAGGTTGAAAGCTCT 27087837 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | || || ||||| || || || || || || || ||||| Sbjct 27087836 GACACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 27087777 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| || |||||| | || ||| | || || ||| || || || Sbjct 27087776 CAGAGATTGATCTTTGCTGGCAAACAACTTGAAGATGGCCGTACTCTAGCTGACTACAAC 27087717 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | || |||||||| Sbjct 27087716 ATCCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGTAT 27087667 >seq6 Length=23636167 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || ||||| || || | ||| | || | Sbjct 4424462 ATGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACCCTGGAGGTGGAGAGTTCT 4424521 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || ||||| ||||| ||||| || ||||||||||| Sbjct 4424522 GATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAG 4424581 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | |||||| | || || |||| |||||||| Sbjct 4424582 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTAGCTGATTATAAC 4424641 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| || || || | ||| | || | ||| | || |||||| Sbjct 4424642 ATTCAAAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGTGGT 4424689 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || || || || ||| | ||| | || || | Sbjct 4366273 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 4366332 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || ||||| || || || || ||||| ||||| Sbjct 4366333 -GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCA 4366391 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||||||||| || || | || || || | || ||||| Sbjct 4366392 ACAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAA 4366451 Query 124718 TATTCAAAAAGAATCAACT 124736 ||| || ||||| |||||| Sbjct 4366452 TATCCAGAAAGAGTCAACT 4366470 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || || || || ||| | ||| | || || | Sbjct 4416810 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 4416869 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || ||||| || ||||| || ||||| ||||| Sbjct 4416870 -GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCA 4416928 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||||||||| || || | || || || | || ||||| Sbjct 4416929 ACAAAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGCCGCACGTTGGCTGACTATAA 4416988 Query 124718 TATTCAAAAAGAATCAACT 124736 || || ||||| |||||| Sbjct 4416989 CATCCAGAAAGAGTCAACT 4417007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755441797427200