Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1288 116 6e-21 seq9 109 8e-19 seq2 89.7 8e-13 seq6 86.0 9e-12 >seq1288 Length=1199740 Score = 116 bits (128), Expect = 6e-21 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 ||||| || || || || | ||||| || | || || || ||| || || |||||||| Sbjct 1162813 GTTCCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGA-ATGTTATAATC 1162871 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || ||| ||||||| ||| || |||||||| ||||||||||||| ||| ||||||||||| Sbjct 1162872 TGCAAGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCCGG 1162931 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||| ||||| || || || Sbjct 1162932 AGGAATGCCTTCCTTGTCCTG 1162952 >seq9 Length=40397281 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || | ||||| || | || || || || || |||||||| Sbjct 38025668 GTTCCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCA 38025609 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | || ||| || |||||||| ||||||||||||||||| |||||||||||| Sbjct 38025608 GCAAGAGTACGGCCATCTTCCAATTGTTTCCCAGCAAAAATCAATCTCTGCTGATCCGGA 38025549 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 38025548 GGAATGCCTTCCTTGTCCTG 38025529 >seq2 Length=53008150 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||||| || |||||||| || || ||||| || || || ||||||| Sbjct 27083359 TTCCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCTG 27083418 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || || | ||| || | || || || ||||||||||| || ||||| || || | Sbjct 27083419 CAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTG 27083478 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || || |||||||| Sbjct 27083479 GAATGCCCTCCTTATCTTG 27083497 >seq6 Length=23636167 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | |||||| || | ||| || | ||||| ||||| || ||||| | Sbjct 4326822 ATGTTATAATCCGCAAGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGC 4326763 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||| ||||||||||| |||||||| Sbjct 4326762 TGCTGATCCGGTGGAATTCCTTCCTTATCTTG 4326731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743512421703680