Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq7 105 6e-18 seq9 93.3 4e-14 seq1 86.0 6e-12 >seq7 Length=22269817 Score = 105 bits (116), Expect = 6e-18 Identities = 121/159 (76%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 ||||| ||||| || || || |||||||||| | || | |||||||| ||||||||| Sbjct 8165155 CACGCGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAAT 8165214 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAA 14322 || ||||| || || || ||||| | ||||||||| || || || | || || ||||| Sbjct 8165215 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAAAAACTCCCTGAGAAGAA 8165273 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14361 || ||||| || ||||||||| ||||||| ||||| Sbjct 8165274 AATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 8165310 >seq9 Length=40397281 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||||||||| |||||||||||| ||||| |||||||| || || || Sbjct 3864694 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 3864635 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||||||| ||| | ||||| | ||| ||||| ||| Sbjct 3864634 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA 3864596 >seq1 Length=32082701 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/161 (72%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 31016684 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 31016625 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | || ||||| || || || ||||| ||||||||||| || ||| || || ||| Sbjct 31016624 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 31016565 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14361 ||||| || || || |||||||||||| | || ||||| Sbjct 31016564 AATATCCCTTCCACGCAAGCAAACGCTATCAGTC--TCTCC 31016526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482336531902720