Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 5e-12 >seq6 Length=23636167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||||||||| || |||||| |||| || || ||||| ||| |||| ||||| ||| Sbjct 5507067 CATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATTACCCTCGAGGTCGA---GAG 5507123 Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||||| | || | || |||| || || | || ||||| | ||| || Sbjct 5507124 CTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGA 5507183 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||| ||||| || | || ||||| || ||||| ||| | ||| | ||||| Sbjct 5507184 CCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGAAGGACGCTCGCGGATTA 5507243 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || ||| ||||| || | || |||||| | ||||| || Sbjct 5507244 CAACATTCAGAAGGAATCAACTCTTCATCTGGTGTTGCG 5507282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418296332487680