Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq1504 369 8e-98 >seq1504 Length=2444 Score = 369 bits (408), Expect = 8e-98 Identities = 775/1113 (70%), Gaps = 37/1113 (3%) Strand=Plus/Minus Query 17041 CACCGCGATCATCGGCCTGGTAGCCACCGCCGAAGACGCCGACGCCACCGCCTTTCCACT 17100 ||| ||||| | ||| |||| ||||| ||| || ||||| ||| || || || || Sbjct 2320 CACGGCGATTGTGGGCATGGTGTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCT 2261 Query 17101 CGATACGCC-GGTACTCATCACCAACGTGCAGGCTGCCATCGGCAAGGCGGGCACCAGCG 17159 | ||| ||| |||||| | ||| | || | | | |||| ||| || |||||| || Sbjct 2260 CAATAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCG 2201 Query 17160 GTACGCTG-CCCGCAAGCCTGCAAGCAATCGCCGACCAGGCCAACGCC-GCCACTGTGGT 17217 |||||||| ||||| | || | || ||||| |||||||| || || | ||| || || Sbjct 2200 GTACGCTGGCCCGCTCAC-TGGACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGT 2142 Query 17218 GGTGCGGGTGAAGCCGGGCGAGGATGAAGCCGCGACCAATAGCGCGGTCATCGGCGGCGT 17277 |||||| || | |||||| ||||| | |||| | ||||||||||| Sbjct 2141 GGTGCGCGTTGCCCAGGGCGAAACCGAAGCGGAAACCACCTCAAATATTATCGGCGGCGT 2082 Query 17278 CAGCGCCGATGGCAAGTACACCGGCATGAAGGCCTTGCTTGCCGCCAAGGCCC-GCTTGG 17336 | ||||| || ||| | |||||||||||||| | ||| |||| || | | ||| | Sbjct 2081 GACTGCCGACGGTAAGAAAACCGGCATGAAGGCGCTACTTTCCGCGCAGTCGCAGCT--G 2024 Query 17337 GCGTGGTACCGCGCATCCT-CGGCGTGCCGGGCCTGGATACCCAGCCGGTCGCTACCGCA 17395 ||||| ||||||||| || |||||||||||| | ||||| ||| | || | || | Sbjct 2023 GCGTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGCAGGCCGTATCCACTGAG 1964 Query 17396 CTCATCGCCATCGCCCAGCAACTGCGCGCCTTCGCTTATGTCTCCGCCAGCGGCTGCAAG 17455 || || | || ||| ||||| ||||| || ||| | || || |||||| || Sbjct 1963 CTGTGAGCG-TGGCGCAGAGCCTGCGGGCCTTTGCGTATATGTCAGCTTACGGCTGTAAA 1905 Query 17456 ACAAAGG-AAGAGGCCACCGCCTACCGCGAGAACTTCGCCGCGCGCGAAGCCATGGTGAT 17514 || || ||||| | | | | |||||||| |||||| | ||| |||| ||| | || Sbjct 1904 ACCGTGGCAAGAG-CGATCACTTACCGCGACAACTTCAGCCAGCGTGAAGGAATGATTAT 1846 Query 17515 CTGGCCGGACTTCCTGA-CGTGGAGCACCGTGGTCAACCAGACCG-TGCCTGCGCCA-GC 17571 |||||| |||||| | | | | || ||| ||| | ||| | | ||| ||| | || Sbjct 1845 CTGGCCTGACTTCATAAACTTTGA-CACGGTGCTG---CAGGCGGATGCGACCGCTACGC 1790 Query 17572 TGTTGCCCAGGCACTGGGCTTGCGTGCCCGGA-TCGATCAGGAGGTCGGTTGGCACAAGA 17630 | |||| || || |||| ||| || | |||| || | ||| |||||||| | Sbjct 1789 TAC-GCCCGCGCCCTTGGCT-GCGCGCTAAAAATCGACGAGCAAACCGGCTGGCACAAAA 1732 Query 17631 CCCTGTCGAACGTCGCCGTCAACGGCGTGACCGGCATCAGCGCCGACGTGTTCTGGGACC 17690 ||||||| ||||| || ||||||||||| |||||| | || || ||||||||||| | Sbjct 1731 CCCTGTCTAACGTGGC-GTCAACGGCGTAACCGGCTTGTCTGCGGATGTGTTCTGGGATC 1673 Query 17691 TGCAGAGCCCCAGCACC-GACGCCA-ACTACCTCAACGAGAACGAGGTCACCACCCTGGT 17748 ||||| | ||| ||| | || ||| ||| | | ||| ||||||| ||||||||| || | Sbjct 1672 TGCAG-GACCCGGCAACTGATGCCGGACTGC-TGAACCAGAACGACGTCACCACCTTGAT 1615 Query 17749 GCAGGAAGGG-GGATTCCGTTTCTGGGGTTCGCGCA-CCTGCAGCGATGA-TCCGCTGTT 17805 |||||||| || ||||| ||||||||||| ||| |||| || ||||| ||||||||| Sbjct 1614 -CAGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTG-AGTGATGAATCCGCTGTT 1557 Query 17806 CGCCTTCGAGAACTACACCCGCACCGCCCAGGTGCTGGCCGACACTATCGCCGAAGCGCA 17865 | || || ||||||||||||||||| ||||| ||||| ||||| || || || | || Sbjct 1556 CCAGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCATGGCAGAGGGCCA 1497 Query 17866 CATGTGGGCGGTTGACAAGCCCATGCACCCGTCACTGGTGCGCGACATCCTTGAGGGCGT 17925 ||||||||||| || | ||| | ||||||| |||| ||||| || | || || | Sbjct 1496 TATGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATATTATCGAAGGTAT 1437 Query 17926 GAACGCGAAGTTCCGCGAGCTCAAGGGGCTC-GGTCT-GATCATCGACGCCCAGGCCTGG 17983 ||| || | ||| || | || || || || |||||| || | |||| Sbjct 1436 CCGCGCCAAAATGCGC-AG--CCTGGTAATCAGGGCTACCTCATCGGCGGTGATTGCTGG 1380 Query 17984 TACGACCCCAACGTGAACGACAAGGACA-CGCTCAAGGCCGGCAAGCTGCGCATCACCTA 18042 || || ||| |||||||| |||| | || || ||||| || || | ||| ||| Sbjct 1379 ATTGATGACAGCGTTAACGACAAAGACAGCCCTGAAAGCCGGGAAACTCTGGATCGACTA 1320 Query 18043 CGACTACACCCCGGTGCCGCCGCTCGAGGACCTGACCTTCTTCCAGAAGATCACCGACAG 18102 |||||| || || ||||||||||| || |||||| | |||| ||||| ||| | Sbjct 1319 CGACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCGCATCACTGACCG 1260 Query 18103 CTATCTCGTCGACTTCGCCAGCCGCGTCAACGC 18135 || || || || ||| ||| |||||| | ||| Sbjct 1259 TTACCTGGTGGATTTCACCACCCGCGTAAGCGC 1227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113732368703616