Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7 159 4e-34 seq1 143 3e-29 seq6 91.5 2e-13 >seq7 Length=22269817 Score = 159 bits (176), Expect = 4e-34 Identities = 406/614 (66%), Gaps = 8/614 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || || |||||||||||||| |||||||| |||| | || || ||||| || | Sbjct 8165147 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGA 8165206 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 | || | ||| ||||||| || |||||||| ||||||||||| | || || | || Sbjct 8165207 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 8165265 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 33749 || ||||| || || || || |||||| || || | |||||| | || | | | Sbjct 8165266 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 8165325 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| ||| ||||| ||| |||||| || || || | ||| || Sbjct 8165326 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 8165382 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 ||||| | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 8165383 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 8165442 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 8165443 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 8165502 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| | ||| || || || || | | | || | || || || || || || Sbjct 8165503 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 8165562 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 |||||| || || || | || || | | || | || ||||| | ||||| Sbjct 8165563 GAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 8165622 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 8165623 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 8165682 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTT 34169 || || || ||||| | ||| || | | || || || ||||| || ||||| || Sbjct 8165683 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCG 8165742 Query 34170 GGATTTGGTGCAAG 34183 |||||||| || || Sbjct 8165743 GGATTTGGGGCTAG 8165756 >seq1 Length=32082701 Score = 143 bits (158), Expect = 3e-29 Identities = 385/586 (66%), Gaps = 6/586 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 31016689 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 31016630 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || || ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 31016629 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCG 31016570 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGC 33750 | ||||| || ||||| || |||||| || || |||||||| | || | | | || Sbjct 31016569 AGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 31016510 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||||| ||| | |||||||||||||| || || || |||| ||||| | Sbjct 31016509 CGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACAGTTTCAA 31016453 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 31016452 AGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCG 31016393 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||||||| || || ||||| || ||||| || || || |||||||| | |||| Sbjct 31016392 AGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCT 31016333 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| | || | |||| | || | | || | ||||| || |||||||| Sbjct 31016332 CGGAGACTTGGATTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCG 31016273 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 ||| || || || || | || || | || || | ||| ||||| | ||||| | Sbjct 31016272 AGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGATT 31016213 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | ||| || | || | || || || ||| | ||||||||||| || || | Sbjct 31016212 CCCACTGGCGGATGTCCTGCGACAGGTCAACCTCCTCCGCCGTCCAAAATGAAGCTTCGG 31016153 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 | || || ||||| | |||||| || | || |||||||| || || Sbjct 31016152 CTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 31016107 >seq6 Length=23636167 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 11060852 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11060793 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 11060792 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 11060734 Query 63781 ACATGTGCTGAGGTCTTTCAACAA 63804 |||| |||||||||||||| |||| Sbjct 11060733 ACATATGCTGAGGTCTTTCTACAA 11060710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629805759429120