Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7 152 7e-32 seq1 123 3e-23 seq6 96.9 5e-15 >seq7 Length=22269817 Score = 152 bits (168), Expect = 7e-32 Identities = 397/603 (66%), Gaps = 2/603 (0%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| || || |||||||||||||| |||||||| |||| | || || ||||| || | Sbjct 8165147 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGA 8165206 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 | || | ||| ||||||| || |||||||| ||||||||||| | |||||| | || Sbjct 8165207 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 8165265 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || |||||||| || || || ||||| || || | |||||| | || | | Sbjct 8165266 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 8165325 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | | ||||| ||| ||||| ||| |||||| || || || | ||||| || Sbjct 8165326 CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATG 8165385 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || | ||||||| ||| ||||| | ||||| | || || || | | || Sbjct 8165386 GCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAG 8165445 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 |||||||| || || ||||| || ||||| ||||| || |||||||| | |||||| Sbjct 8165446 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCG 8165505 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | | ||| || || || || | | | || | || || || || ||||| | Sbjct 8165506 GCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 8165565 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 ||||| || || || | || || | | || | || |||| | ||||| | | Sbjct 8165566 GCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCC 8165625 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || | || ||||| || | ||| ||||| || | |||||||| || || || || Sbjct 8165626 CAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCT 8165685 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGA 36748 || || ||||| | ||| || | | || ||||| || || || ||||| || || Sbjct 8165686 TTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGA 8165745 Query 36749 TTT 36751 ||| Sbjct 8165746 TTT 8165748 >seq1 Length=32082701 Score = 123 bits (136), Expect = 3e-23 Identities = 383/587 (65%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 31016689 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 31016630 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | || || || ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 31016629 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCC 31016571 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCA 36325 || ||||| || ||||| || ||||| || || |||||||| | || | | | Sbjct 31016570 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 31016511 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | ||| ||||| ||| | |||||||||||||| || || || |||| || || Sbjct 31016510 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACAGTTTCA 31016454 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 | || ||| | | | ||||| | | ||| | || || || | | || Sbjct 31016453 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 31016394 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 |||||||| || || ||||| || ||||| ||||| || |||||||| | ||| Sbjct 31016393 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 31016334 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 |||| | || | |||| | || | | || | ||||| || ||||| || Sbjct 31016333 TCGGAGACTTGGATTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 31016274 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 ||| || || || || | || || | || || | ||| |||| | ||||| Sbjct 31016273 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGAT 31016214 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 31016213 TCCCACTGGCGGATGTCCTGCGACAGGTCAACCTCCTCCGCCGTCCAAAATGAAGCTTCG 31016154 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || || || ||||| | |||||| || | || || |||||||| || Sbjct 31016153 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 31016107 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||| ||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 28519932 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 28519873 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || ||||| ||||| |||||||||| || || ||| Sbjct 28519872 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 28519813 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 28519812 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 28519753 Query 66396 CCCTCTATACTATCATCCATCATG 66419 || || ||||||||||| ||||| Sbjct 28519752 CCTTCAATACTATCATCTTTCATG 28519729 >seq6 Length=23636167 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 11061181 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 11061122 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 |||||||| || || || || ||||| |||||| |||||||||| || || ||| Sbjct 11061121 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 11061062 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 11061061 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 11061002 Query 66396 CCCTCTATACTATCATCCATCAT 66418 || || ||||||||||| |||| Sbjct 11061001 CCTTCAATACTATCATCTTTCAT 11060979 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 11060852 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11060793 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 11060792 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 11060734 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 11060733 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 11060674 Query 66634 AAGTTTTAAAACCAAAATA 66652 ||||| || ||||| || Sbjct 11060673 GGGTTTTGAAGCCAAAGTA 11060655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658160426351360