Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq2 102 8e-17 seq1288 93.3 4e-14 seq5 86.0 6e-12 >seq6 Length=23636167 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || |||||||||||||| |||||| || |||| ||||||||| || || || Sbjct 4424202 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCG 4424143 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || || || || || || ||||| ||| || || Sbjct 4424142 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 4424083 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| | |||||| || | ||| | ||||||||||| | ||| Sbjct 4424082 ACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 4424023 Query 139748 TTTACGAATATTTGCAT 139764 || || ||||| ||||| Sbjct 4424022 TTCACAAATATCTGCAT 4424006 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| || || ||||| || || |||||| || |||| |||||||||||| Sbjct 5506586 TGAAGCGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCATCTTCGAGCTGT 5506527 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| |||||||||| ||||| || ||||| || ||||| ||||| ||| || Sbjct 5506526 TTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATCTTG 5506467 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||| || || | || | ||||||||||| Sbjct 5506466 GCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCGGTT 5506407 Query 139742 AACGTTTTTACGAATATTTGCATAGCTTA 139770 | ||||| ||||| || ||||| | ||| Sbjct 5506406 AGGGTTTTCACGAAGATCTGCATCGTTTA 5506378 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| ||||| Sbjct 3889327 GCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 3889268 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| |||||||| || || || ||||||| || ||||| || || || Sbjct 3889267 CAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 3889208 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| | |||||| Sbjct 3889207 AATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCCAC 3889148 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||||||||| ||||| || || || ||||| Sbjct 3889147 CTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCACAAAGATCTGCAT 3889100 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| |||||| | || | || |||||||| || || Sbjct 3889752 GTGGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGGCCATCCTCGAGCTGCTTGCCG 3889693 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| || ||||| || || |||||||| ||| || || Sbjct 3889692 GCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTC 3889633 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||||||||| | ||| | |||||| ||||||||||| Sbjct 3889632 ACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTC 3889573 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 3889572 TTGACGAAGATCTGCAT 3889556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||| | ||| || || || || |||||||||||| || |||| | Sbjct 3889542 CGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCCAGGGTGCGGCCG 3889483 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || || |||| || | ||||| || || || || ||||| ||| Sbjct 3889482 TCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATCCCTTCCTTG 3889423 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||| | ||| | | Sbjct 3889422 TCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATC 3889363 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||||||| || || ||||| || ||||| Sbjct 3889362 GTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 3889328 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| |||||| || |||| ||| |||||||| Sbjct 4325931 TGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGC 4325872 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| || | ||||| || || || || || || ||||| ||| || Sbjct 4325871 TTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGGAATTCCCTCCTTGTCTTGGATCTTG 4325812 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | || | ||||| | | ||| || || | || | || ||||||||| Sbjct 4325811 GCCTTTACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCGGTC 4325752 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| || |||||| Sbjct 4325751 AAGGTTTTCACGAAGATCTGCATA 4325728 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || |||||||||||||| ||| | || | || || ||||| || || Sbjct 4327065 GTGGACTCCTTCTGAATGTTATAATCAGCT-AAAGTACGGCCATCCTCAAGCTGCTTCCC 4327007 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||| || | |||||||| || || || ||||| ||||| ||| | |||| | Sbjct 4327006 AGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTC-CTGAATCTTTGCCT 4326948 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | || || | | ||||||||| | || | ||||| || ||||| | Sbjct 4326947 TAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTAATAGTCTTCCCAGTCAAGG 4326888 Query 139746 TTTTTACGAATATTTGCATA 139765 | || || ||||| |||||| Sbjct 4326887 TCTTGACAAATATCTGCATA 4326868 >seq2 Length=53008150 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| ||||| | || ||||| || || |||||||||||| | ||||| | Sbjct 27088137 ACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCC 27088196 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || || ||||||||||||||| |||| || | |||||||| || || || ||||| || Sbjct 27088197 ATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTT 27088256 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | || | || |||| | || ||||||| ||| | Sbjct 27088257 GTCCTGGATCTTAGCTTTGACATTATCGATGGTATCGGAGCTTTCAACCTCAAGGGTTAT 27088316 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||| | || || || || |||||||| Sbjct 27088317 GGTTTTTCCGGTGAGAGTCTTCACAAAGATTTGCAT 27088352 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || || || || ||||| || | ||||| || ||| Sbjct 27128010 ACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCAGCAAGTGTGCGACCATCCTCG 27128069 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||| || | |||||||| || || || ||||| ||||| | Sbjct 27128070 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGG 27128129 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||||| | || | ||||||| | || ||||||| ||| | |||||| Sbjct 27128130 ATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTG 27128189 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| || || |||||||| Sbjct 27128190 CCGGTGAGAGTTTTCACAAAGATTTGCAT 27128218 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||||||||| Sbjct 27127764 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGCA 27127823 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || |||||||||||||| ||| |||| || | ||||| || || || Sbjct 27127824 AGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 27127883 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | ||| | | || | ||||||| | ||||| Sbjct 27127884 ATCCCTTCCTTGTC-CTGAATCTTGGCTTTCACATTGTCAATGGTGTCGGAGCTTTCCAC 27127942 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | ||||||||| || | || ||||| || || |||||| Sbjct 27127943 CTCAAGAGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 27127991 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || ||| | || | ||| | || ||||| || ||||||||||| ||| Sbjct 27084501 CCACCTCTTAGACGGAGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCA 27084560 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || || ||||| |||||| | || || | |||||| || || || Sbjct 27084561 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 27084620 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||| | | || | ||||||| | ||||| Sbjct 27084621 ATCCCTTCCTTGTC-CTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCAC 27084679 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | ||||| || || | || ||||| || || |||||| Sbjct 27084680 CTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 27084728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| ||||| Sbjct 45803861 GCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCAC 45803920 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| || ||||| || || || ||||||| || ||||| || || || Sbjct 45803921 CAAGGTGCGCCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 45803980 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || | | | || | |||||| | |||||| Sbjct 45803981 AATCCCTTCCTTGTCCTGGATCTTAGCCTCGACATTGTCGATCGTGTCGAAGCTCTCCAC 45804040 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||||||||| ||||| || || || ||||| Sbjct 45804041 CTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCACAAAGATCTGCAT 45804088 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| || || |||||||| || | |||| || ||| Sbjct 27084747 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCCTCG 27084806 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || ||||| |||||| |||| || | |||||| || || || || ||||| || || | Sbjct 27084807 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 27084866 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||||| | || | ||||| | | || ||||||| ||| | |||||| Sbjct 27084867 ATCTTGGCTTTTACATTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 27084926 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || || || |||||||| Sbjct 27084927 CCGGTGAGAGTCTTCACAAAGATTTGCAT 27084955 >seq1288 Length=1199740 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| ||| ||||| ||||||||||||||||| | || || ||||| Sbjct 1162834 ACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCTGCCATCTTCC 1162893 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 | |||||||||||| | ||||| | |||||||| ||||| |||||||| ||||| Sbjct 1162894 AATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 1162949 >seq5 Length=49531769 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || || || || ||| || || | | |||||||||||| || || Sbjct 45288692 GTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGCCCGTCTTCGAGCTGCTTGCCG 45288633 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 45288632 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 45288573 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| || ||||||||| | || | ||||| || || | ||| Sbjct 45288572 ACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 45288513 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 45288512 TTCACGAAGATCTGCAT 45288496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496054673996800