Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7 111 2e-19 seq9 95.1 1e-14 seq1 87.8 2e-12 >seq7 Length=22269817 Score = 111 bits (122), Expect = 2e-19 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| ||||| || || || |||||||||| | || | |||||||| ||||||||| Sbjct 8165155 CACGCGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAAT 8165214 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| || || || ||||| | ||||||||| || ||| ||| || ||||| Sbjct 8165215 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 8165274 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 || ||||| || ||||||||| ||||||| ||||| Sbjct 8165275 ATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 8165310 >seq9 Length=40397281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||||||||| |||||||||||| ||||| |||||||| || || || Sbjct 3864694 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 3864635 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||||| ||| | ||||| | ||| ||||| ||| |||| Sbjct 3864634 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA-CAAA 3864592 >seq1 Length=32082701 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 31016684 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 31016625 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGC--AGCAAATGACCCGGAAA 13986 | || ||||| || || || ||||| ||||||||||| || || || || || || | Sbjct 31016624 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC--GAGA 31016567 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 ||||||| || || || |||||||||||| | || ||||| Sbjct 31016566 AGAATATCCCTTCCACGCAAGCAAACGCTATCAGTC--TCTCC 31016526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479718981113600