Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7 102 8e-17 seq9 93.3 4e-14 seq1 89.7 5e-13 >seq7 Length=22269817 Score = 102 bits (112), Expect = 8e-17 Identities = 120/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 ||||| ||||| || || || |||||||||| | || | |||||||| ||||||||| Sbjct 8165155 CACGCGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAAT 8165214 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAA 13778 || ||||| || || || ||||| | ||||||||| || || || | || || ||||| Sbjct 8165215 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAAAAACTCCCTGAGAAGAA 8165273 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCC 13817 || ||||| || ||||||||| |||| || ||||| Sbjct 8165274 AATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 8165310 >seq9 Length=40397281 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||||||||| |||||||||||| ||||| |||||||| || || || Sbjct 3864694 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 3864635 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||| ||| | ||||| | ||| ||||| ||| Sbjct 3864634 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA 3864596 >seq1 Length=32082701 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 31016684 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 31016625 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 | || ||||| || || || ||||| ||||||||||| || ||| || || ||| Sbjct 31016624 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 31016565 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCC 13817 ||||| || || || |||||||||||| |||| ||||| Sbjct 31016564 AATATCCCTTCCACGCAAGCAAACGCTATCAGTC--TCTCC 31016526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478579802530560