Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 seq6 91.5 1e-13 >seq2 Length=53008150 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| |||| || |||||| || | ||||| || | Sbjct 27087670 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT 27087729 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | ||||||||| ||||| ||||||| ||| ||||||| || Sbjct 27087730 AGAGTACGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGG 27087789 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060 | || || || || |||| || | ||||| || | | |||||| ||| | | | Sbjct 27087790 ATGCCCTCCTTGTC-CTGAATCTTAGCCTTGACATTGTCGATTGTGTCAG-AGCTTTCAA 27087847 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||||||||| || || || |||||||||||||| ||||| Sbjct 27087848 CCTCCAAAGTTATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 27087896 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||||||| ||||||||||| | ||| ||||| || | |||||||| | Sbjct 27083361 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCTGCA 27083420 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | || ||||| ||||||||||| | ||| || || | || Sbjct 27083421 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGA 27083480 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | ||| || Sbjct 27083481 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACC 27083540 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || ||||| ||||||||||||||||| Sbjct 27083541 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 27083587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||| | || |||||| || | ||||| || | Sbjct 27127308 CCACCACGGAGACGAAGCACCAAATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 27127367 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | ||||||||||||||| || || | ||||||||| | || Sbjct 27127368 AGAGTACGACCATCTTCGAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGG 27127427 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | ||||| || | | ||||| ||| || || Sbjct 27127428 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTC-AGAGCTTTCAAC 27127486 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||||| || || || || |||||||||||||| ||||| Sbjct 27127487 CTCCAAAGTTATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 27127534 >seq6 Length=23636167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || | || | ||| | |||| || ||||| | |||||||||| | Sbjct 4424232 CCACCACGAAGCCTGAGGACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCC 4424173 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| || | ||| || |||||||| || | ||||| || || | ||| Sbjct 4424172 AAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGA 4424113 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | ||||| || | | ||||||| ||| ||| || Sbjct 4424112 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGG-AGCTCTCCAC 4424054 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 || | || || || || ||||| || ||||||||||| || ||||| ||| Sbjct 4424053 TTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCACAAATATCTGCATCTTC 4424002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | | ||| | ||| | || |||||||| | ||||||||||| Sbjct 5506611 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 5506552 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || || | ||||| || || || |||| ||||| || || | || Sbjct 5506551 CAAGGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 5506492 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | ||||| || | | |||||| ||| ||||| Sbjct 5506491 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCG-GAGCTCTCGA 5506433 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || |||||||| |||||||| || || ||||| Sbjct 5506432 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 5506384 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| || || || |||| || | ||| || |||||||| Sbjct 5507030 TCCTTCTGGATATTGTAATCGGCCAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAG 5506971 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| | ||| || || | ||| | ||||| || || |||| | ||||| || Sbjct 5506970 ATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 5506911 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | |||||| ||| |||||| || | || || || ||||| ||||| ||||| || Sbjct 5506910 TCGATCGTGTCG-GAGCTCTCGACTTCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGAC 5506852 Query 43098 AAAAATTTGCAT 43109 || || ||||| Sbjct 5506851 GAATATCTGCAT 5506840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381362609495232